Jatropha Genome Database

JcCB0302981.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0302981.20 + phase: 0 /partial
         (178 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HEA8_POPTR (tr|B9HEA8) Predicted protein OS=Populus trichocarp...   147   6e-34
B9S9M0_RICCO (tr|B9S9M0) Poly(RC)-binding protein, putative OS=R...   144   3e-33
A5AKJ3_VITVI (tr|A5AKJ3) Putative uncharacterized protein OS=Vit...   133   8e-30
A2Q1N8_MEDTR (tr|A2Q1N8) KH, type 1 OS=Medicago truncatula GN=Mt...   131   3e-29
B9IJ63_POPTR (tr|B9IJ63) Predicted protein OS=Populus trichocarp...   122   2e-26
D7MRA9_ARALY (tr|D7MRA9) Predicted protein OS=Arabidopsis lyrata...    72   2e-11
Q9FMF0_ARATH (tr|Q9FMF0) Similarity to RNA-binding protein OS=Ar...    72   2e-11
Q84ZW9_ARATH (tr|Q84ZW9) HEN4 isoform 2 OS=Arabidopsis thaliana ...    72   2e-11
Q84ZX0_ARATH (tr|Q84ZX0) HEN4 OS=Arabidopsis thaliana GN=HEN4 PE...    72   2e-11
B9HFL8_POPTR (tr|B9HFL8) Predicted protein OS=Populus trichocarp...    58   4e-07

>B9HEA8_POPTR (tr|B9HEA8) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_562363 PE=4 SV=1
          Length = 747

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 106/187 (56%), Gaps = 18/187 (9%)

Query: 3   STFLSPPLKRTIHYSTITAGMPDPNSINGTS-NKRSK---XXXXXXXXXXXGHVSFRLLC 58
           S FLSPP KR ++YSTI    P+PNS NG S NKRSK              GHV FRLLC
Sbjct: 6   SPFLSPPAKRPVYYSTILPD-PNPNSTNGYSANKRSKPHPSTSAAPSPVPSGHVLFRLLC 64

Query: 59  HASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXXNDGS 118
           H SR              LQQ TGAKIRIE+AP+ESPDR                   G 
Sbjct: 65  HDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVVFS---GI 121

Query: 119 GRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGSVIG------ 172
           G   I+VSK QEALVRVFERIL VAAESD   VAGG+VSCRLL E   VG+VIG      
Sbjct: 122 G-SAIEVSKGQEALVRVFERILEVAAESD--SVAGGLVSCRLLAEISSVGAVIGKGGKTV 178

Query: 173 -KRREDC 178
            K R+DC
Sbjct: 179 EKIRKDC 185


>B9S9M0_RICCO (tr|B9S9M0) Poly(RC)-binding protein, putative OS=Ricinus communis
           GN=RCOM_0886780 PE=4 SV=1
          Length = 698

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 109/194 (56%), Gaps = 23/194 (11%)

Query: 1   MGSTFLSPPLKRTIHYSTITAGMPDPN-SINGTSNKRSKXXXXXXXXXXX-----GHVSF 54
           MGS FL PP KR I Y+   AGMPDPN + NG SNKR K                GHVSF
Sbjct: 1   MGSNFLYPPSKRPIQYNA--AGMPDPNPTANGLSNKRPKQPPANQNAAAPLPLPPGHVSF 58

Query: 55  RLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXX 114
           RLLCHASR             QLQQ +GAKIRIEE+P ES DR                 
Sbjct: 59  RLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKVRVE 118

Query: 115 NDGSGRQEIDVSKAQEALVRVFERILTVAAESDGIG---VAGGVVSCRLLGEAKQVGSVI 171
           +     +E+DVS+AQE L+RVFERIL VAAESDGI      GGVVSCR+L  +KQ GSVI
Sbjct: 119 S-----EEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVI 173

Query: 172 G-------KRREDC 178
           G       K R+DC
Sbjct: 174 GKGGKVVEKIRKDC 187


>A5AKJ3_VITVI (tr|A5AKJ3) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_022037 PE=4 SV=1
          Length = 587

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 103/177 (58%), Gaps = 13/177 (7%)

Query: 1   MGSTFLSPPLKRTIHYSTITAGMPDPNSI----NGTSNKRSKXXXXXXXXXXXGHVSFRL 56
           M ++FLSPP KR+I+ +T   GMPDP  +    NG+S KRSK           GHV+FRL
Sbjct: 1   MEASFLSPPAKRSIYTAT---GMPDPIPMAYAPNGSS-KRSKPPPPPIPVPA-GHVAFRL 55

Query: 57  LCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXXND 116
           LCHASR             QLQ DTGA+IR+E++P  S  R                   
Sbjct: 56  LCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNRRIAL--Q 113

Query: 117 GSGRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGSVIGK 173
           GS  +E++ S AQEA++RVFERIL VAA  DG+   GGVVSCRLL E  QVGSVIGK
Sbjct: 114 GSS-EEVEASAAQEAVLRVFERILEVAAVVDGVP-PGGVVSCRLLAETSQVGSVIGK 168


>A2Q1N8_MEDTR (tr|A2Q1N8) KH, type 1 OS=Medicago truncatula
           GN=MtrDRAFT_AC148971g21v2 PE=4 SV=1
          Length = 222

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 98/175 (56%), Gaps = 8/175 (4%)

Query: 1   MGSTFLSPPLKRTIHYSTITAGMPDPNSINGTSNKRSKXXXXXXXXXX--XGHVSFRLLC 58
           MGS FLSPP KR+I       G+PDPN     S+KR+K             GHV+FRLLC
Sbjct: 1   MGSNFLSPPAKRSI------TGLPDPNPFPNGSSKRAKPSKPPQQPLPIPAGHVAFRLLC 54

Query: 59  HASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXXNDGS 118
           ++SR              LQ  TGAKIRIE++P ESPDR                 +   
Sbjct: 55  NSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSG 114

Query: 119 GRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGSVIGK 173
             + I+VSKAQEAL+RVF+RIL VAAE +GI +    VSCRL+ ++ Q GSVIGK
Sbjct: 115 DGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIGK 169


>B9IJ63_POPTR (tr|B9IJ63) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_825463 PE=4 SV=1
          Length = 722

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 92/166 (55%), Gaps = 17/166 (10%)

Query: 24  PDPNSINGTS-NKRSKXXXXXXXX---XXXGHVSFRLLCHASRXXXXXXXXXXXXXQLQQ 79
           P+PN  NG+S NKRSK              GHVSFRLLCHASR              LQQ
Sbjct: 4   PNPNYPNGSSANKRSKPQPSASAAPLPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQ 63

Query: 80  DTGAKIRIEEAPVESPDRXXXXXXXXXXXXXXXXXNDGSGRQEIDVSKAQEALVRVFERI 139
            TGAK+RIE+AP +SPDR                  + +    ++VSK QEALVRVFERI
Sbjct: 64  QTGAKVRIEDAPSDSPDRVITVIGPITQSAVVFSRIESA----VEVSKGQEALVRVFERI 119

Query: 140 LTVAAESDGIGVAGGVVSCRLLGEAKQVGSVIG-------KRREDC 178
           L VAAESD   VA GVVSCR+L E   VG+VIG       K R+DC
Sbjct: 120 LEVAAESD--SVADGVVSCRMLAEVSSVGAVIGKGGKVVEKIRKDC 163


>D7MRA9_ARALY (tr|D7MRA9) Predicted protein OS=Arabidopsis lyrata subsp. lyrata
           GN=ARALYDRAFT_686162 PE=4 SV=1
          Length = 865

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 43  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQADSKS 102

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 103 RVKLGVNNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 154

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 155 ESSHAGAVIGK 165


>Q9FMF0_ARATH (tr|Q9FMF0) Similarity to RNA-binding protein OS=Arabidopsis
           thaliana GN=At5g64390 PE=4 SV=1
          Length = 833

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 156

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 157 ESSHAGAVIGK 167


>Q84ZW9_ARATH (tr|Q84ZW9) HEN4 isoform 2 OS=Arabidopsis thaliana GN=HEN4 PE=2
           SV=1
          Length = 836

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 156

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 157 ESSHAGAVIGK 167


>Q84ZX0_ARATH (tr|Q84ZX0) HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=2 SV=1
          Length = 869

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           GH +FRLLC  S              QLQQ TGAKIR+EE P  SPDR            
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 110 XXXXXNDGSGR-------QEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLG 162
                 + +G        +E++VSKAQ AL++VFE +L   A+SD        V CRLL 
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEADSD-------TVVCRLLT 156

Query: 163 EAKQVGSVIGK 173
           E+   G+VIGK
Sbjct: 157 ESSHAGAVIGK 167


>B9HFL8_POPTR (tr|B9HFL8) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_563284 PE=4 SV=1
          Length = 404

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 50  GHVSFRLLCHASRXXXXXXXXXXXXXQLQQDTGAKIRIEEAPVESPDRXXXXXXXXXXXX 109
           G V+FR++CHAS+             Q++ +TG  +  EEA   S  R            
Sbjct: 24  GQVAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRAIVVAGSASPER 83

Query: 110 XXXXXNDGSGRQEIDVSKAQEALVRVFERILTVAAESDGIGVAGGVVSCRLLGEAKQVGS 169
                 D    + ++VS AQEA+VRV ER+  V A  DG    G    C LL    Q+G+
Sbjct: 84  KIAVGED----ETVEVSAAQEAVVRVLERMWEVDAVKDGGDCEG---YCGLLANTSQIGA 136

Query: 170 VIGK 173
           V+G+
Sbjct: 137 VVGR 140