Jatropha Genome Database

JcCB0287791.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0287791.10 + phase: 0 /pseudo/partial
         (310 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SNV7_RICCO (tr|B9SNV7) Ubiquitin carboxyl-terminal hydrolase O...   162   6e-38
B9N2M4_POPTR (tr|B9N2M4) Ubiquitin carboxyl-terminal hydrolase O...   130   2e-28
B9MU27_POPTR (tr|B9MU27) Predicted protein OS=Populus trichocarp...   116   3e-24
D7TTW6_VITVI (tr|D7TTW6) Whole genome shotgun sequence of line P...    57   4e-06

>B9SNV7_RICCO (tr|B9SNV7) Ubiquitin carboxyl-terminal hydrolase OS=Ricinus
           communis GN=RCOM_1279300 PE=3 SV=1
          Length = 753

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 146/277 (52%), Gaps = 70/277 (25%)

Query: 36  ENVDHCKDHGTTSDVVRTSTHFSMTTAVVEAQMNETGNDAEGVSAMISNGTGQSGPQICS 95
           E++DH K   + SDV +TS HFS  T V + ++N  GN AEG+SA I  G+G SGP++C 
Sbjct: 543 ESLDHHKSSVSISDVEKTSNHFSCVTVVEKDEINAIGNGAEGISAQILCGSGNSGPKLCY 602

Query: 96  DESRNDSDIPMNDVSASLGVVDWSNGTAKSEKLEETRTDIPMEASASLGARDWHNGLLKR 155
           + SR  +D+ M DVS S                                           
Sbjct: 603 ESSR--ADVSMTDVSVS------------------------------------------- 617

Query: 156 EKLEDIRVDGILHSEKLGALPPVKENNLCQVVHNIGRKDGLGPLTPPRSPV-DMNSGGLP 214
             LE      ILH EKLG           Q     GR D + PL PPRS   D+N GG+P
Sbjct: 618 --LEATNSHEILHDEKLG-----------QGAGTSGRND-VDPLMPPRSSSPDLNFGGVP 663

Query: 215 ETRHHIRRDHLKVENSRREHLENMENCKKLKRGVRDQRHEAIRYISKNVPSARGIRLMAA 274
             + HIRRDHLKVE         + + KK K+ +R+ R EA+RY+SKN+ ++R  +L+ A
Sbjct: 664 SAKKHIRRDHLKVER--------LIDFKKPKKAMRNHREEALRYVSKNMAASRRSKLIDA 715

Query: 275 MLPRNDKKRRLR--SSPCKQASPPSSRHKPNQRLAVL 309
           +LP+NDKKRRLR  SS CKQASPP +R K +QR AVL
Sbjct: 716 ILPQNDKKRRLRSSSSSCKQASPPGARSKISQRSAVL 752


>B9N2M4_POPTR (tr|B9N2M4) Ubiquitin carboxyl-terminal hydrolase OS=Populus
           trichocarpa GN=POPTRDRAFT_827644 PE=3 SV=1
          Length = 809

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 101/150 (67%), Gaps = 15/150 (10%)

Query: 164 DGILHSEKLGALPPVKENNLCQVVHNIGRKDGLGPLTPPRSPV-DMNSGGLPETRHHIRR 222
           DG+LH E L   PPV+E+   Q    IGRK  L P  PPRSP  D+ SG LPE R  I R
Sbjct: 672 DGVLHDEML-CFPPVEEDYSNQCAEKIGRKGDLRPSAPPRSPTSDVYSGELPEARRCIPR 730

Query: 223 DHLKVENSRREHLENMENCKKL-KRGVRD-QRHEAIRYISKNVPSARGIRLMAAMLPRND 280
           +HLKVEN    H+    NCK+  K+G +D Q  EA+R I K +P+ARG++LMAA+LPRND
Sbjct: 731 EHLKVEN----HV----NCKRSSKKGTKDSQTAEALRCI-KRMPTARGMKLMAALLPRND 781

Query: 281 KKRRLRSSPCKQASPPSSRHKPNQRLAVLR 310
           K R  RSSPCK+ASPP SR KP  R+AV+R
Sbjct: 782 KTRP-RSSPCKRASPPGSRRKP-IRVAVIR 809


>B9MU27_POPTR (tr|B9MU27) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_590014 PE=4 SV=1
          Length = 835

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 98/180 (54%), Gaps = 29/180 (16%)

Query: 134 DIPM-EASASLGARDWHNGLLKREKLEDIRVDGILHSEKLGALPPVKENNLCQVVHNIGR 192
           + PM + S  LG  D+H              DG+LH E L   P V+E+N  Q    I  
Sbjct: 682 ETPMVDVSVPLGVSDYH--------------DGVLHDEMLCFPPSVEEDNCNQGAEKIEI 727

Query: 193 KDGLGPLTPPRSPVDMNSGGLPETRHHIRRDHLKVENSRREHLENMENCKKLKRGVR--D 250
              L   TP RSP      GLPE RH I RDH K EN          NCK+  + V    
Sbjct: 728 NGDLHSPTPHRSPTP--DKGLPEARHRILRDHQKGENRV--------NCKRSSKKVTKDS 777

Query: 251 QRHEAIRYISKNVPSARGIRLMAAMLPRNDKKRRLRSSPCKQASPPSSRHKPNQRLAVLR 310
           Q  EA+R I K +P+ARG++LMAAMLPRNDK R  RSSPCK+ASPP SR KP  R+AV+R
Sbjct: 778 QTAEALRCI-KRMPTARGMKLMAAMLPRNDKIRP-RSSPCKRASPPGSRCKPTIRMAVMR 835


>D7TTW6_VITVI (tr|D7TTW6) Whole genome shotgun sequence of line PN40024,
           scaffold_12.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00013154001 PE=4 SV=1
          Length = 547

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 20/137 (14%)

Query: 163 VDGIL-HSEKLGALPPVKENNLCQVVHNIGRKDGLGPLTPPRSPV-DMNSGGLPETRHHI 220
            DG L H++ +    P ++++  Q + N   K  + P TPPRSP  D+ +   PE  ++I
Sbjct: 370 FDGTLDHTQNISTTSPCRDHDGNQHI-NENCKSKIHPQTPPRSPSPDIYAEEPPEVSYNI 428

Query: 221 RRDHLKVENSRREHLENMENCKK-LKRGVRDQRHEAIRYISKNVPSARGIRLMAAM---- 275
            R HL+ +N           CKK L + + D R      + KN+P++R +RLMAAM    
Sbjct: 429 PRGHLRQKNQVA--------CKKPLNKALEDSRKREACKLCKNMPASRSMRLMAAMKGSQ 480

Query: 276 ----LPRNDKKRRLRSS 288
               L +   KRR+ SS
Sbjct: 481 SEGSLGKKKSKRRMESS 497