Jatropha Genome Database

JcCB0286011.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0286011.10 - phase: 0 /pseudo/partial
         (93 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9ST55_RICCO (tr|B9ST55) Putative uncharacterized protein OS=Ric...    74   8e-12

>B9ST55_RICCO (tr|B9ST55) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0683910 PE=4 SV=1
          Length = 176

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 4  KVK*PFHDVRPTNQATRGGLEEKLLHALDLNGGGLKVEAVQFHGKLYVENYLD*EANLGN 63
          KVK PF + R   +  RG LEE+LLH    +GGG+KVE   FHGK + E+YLD ++N  N
Sbjct: 4  KVKNPFRETRLVIRVARGRLEERLLHT---HGGGVKVEVADFHGKSHTEDYLDWKSNSEN 60

Query: 64 YLEWKPM 70
          Y EWKPM
Sbjct: 61 YFEWKPM 67