Jatropha Genome Database

JcCB0282311.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0282311.10 + phase: 0 
         (97 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9PAA9_POPTR (tr|A9PAA9) Predicted protein OS=Populus trichocarp...   102   2e-20
B9T3T7_RICCO (tr|B9T3T7) Blue copper protein, putative OS=Ricinu...    96   2e-18
B9H453_POPTR (tr|B9H453) Predicted protein OS=Populus trichocarp...    89   1e-16
D7SXH0_VITVI (tr|D7SXH0) Whole genome shotgun sequence of line P...    80   8e-14
Q2HW94_MEDTR (tr|Q2HW94) Blue (Type 1) copper domain OS=Medicago...    68   3e-10
A1YMX0_BRACM (tr|A1YMX0) Lamin OS=Brassica campestris PE=2 SV=1        67   9e-10
D7MVI7_ARALY (tr|D7MVI7) Putative uncharacterized protein OS=Ara...    63   1e-08
Q2HWC3_MEDTR (tr|Q2HWC3) Blue (Type 1) copper domain OS=Medicago...    63   1e-08
Q9MAC1_ARATH (tr|Q9MAC1) At3g01070 OS=Arabidopsis thaliana GN=At...    62   3e-08
D7M7C0_ARALY (tr|D7M7C0) Putative uncharacterized protein OS=Ara...    62   3e-08
Q9STZ8_ARATH (tr|Q9STZ8) At4g12880 OS=Arabidopsis thaliana GN=T2...    61   5e-08
Q39040_ARATH (tr|Q39040) Lamin OS=Arabidopsis thaliana PE=2 SV=1       60   5e-08
D7LAJ4_ARALY (tr|D7LAJ4) Putative uncharacterized protein OS=Ara...    60   7e-08
C6SVN5_SOYBN (tr|C6SVN5) Putative uncharacterized protein OS=Gly...    59   1e-07
Q8L9G8_ARATH (tr|Q8L9G8) Putative lamin OS=Arabidopsis thaliana ...    55   3e-06
Q39370_BRAOL (tr|Q39370) Lamin OS=Brassica oleracea PE=2 SV=1          54   8e-06

>A9PAA9_POPTR (tr|A9PAA9) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_1105349 PE=2 SV=1
          Length = 176

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 53/62 (85%), Gaps = 1/62 (1%)

Query: 5  RRGCGFRSSMMVPVAVVIL-MVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGD 63
           RG GF S MMV +AV++  MV MVPEVSATRWTVGSNMGWT+NVNYTIWAQ KHFYNGD
Sbjct: 2  ERGSGFGSPMMVALAVLVFAMVVMVPEVSATRWTVGSNMGWTSNVNYTIWAQGKHFYNGD 61

Query: 64 WL 65
          WL
Sbjct: 62 WL 63


>B9T3T7_RICCO (tr|B9T3T7) Blue copper protein, putative OS=Ricinus communis
          GN=RCOM_0169200 PE=4 SV=1
          Length = 183

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 58/71 (81%)

Query: 5  RRGCGFRSSMMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDW 64
          +RGCGF S +++ V  V+LMV M PEVSATRWTVG+NMGW TNVNYTIWA+DKHFYNGDW
Sbjct: 3  KRGCGFVSPLVMMVVAVVLMVAMAPEVSATRWTVGANMGWNTNVNYTIWAKDKHFYNGDW 62

Query: 65 LCKFSFLTIFL 75
          L   S L +F+
Sbjct: 63 LSHISLLPVFV 73


>B9H453_POPTR (tr|B9H453) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_556316 PE=4 SV=1
          Length = 173

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 50/63 (79%), Gaps = 3/63 (4%)

Query: 8  CGFRSSM---MVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDW 64
           GF SSM   +    +V  M+ MVPEVSATRWTVGSNMGWTTNVNYT+WAQDKHFYNGDW
Sbjct: 4  SGFGSSMTVAVAVAVLVFAMMVMVPEVSATRWTVGSNMGWTTNVNYTMWAQDKHFYNGDW 63

Query: 65 LCK 67
          L +
Sbjct: 64 LYR 66


>D7SXH0_VITVI (tr|D7SXH0) Whole genome shotgun sequence of line PN40024,
          scaffold_108.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00011476001 PE=4 SV=1
          Length = 159

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 39/42 (92%)

Query: 24 MVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          +V M+P+VSATRWTVG N GW+TNVNYT+WA+DKHFYNGDWL
Sbjct: 4  VVLMLPDVSATRWTVGGNQGWSTNVNYTVWAKDKHFYNGDWL 45


>Q2HW94_MEDTR (tr|Q2HW94) Blue (Type 1) copper domain OS=Medicago truncatula
          GN=MtrDRAFT_AC147482g37v2 PE=4 SV=1
          Length = 179

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 6/69 (8%)

Query: 1  MDGTRRGCGFRSSMMVPVAVVILMVF----MVPEVSATRWTVGSNMGWTTNVNYTIWAQD 56
          M+G ++     +S + P  V +L+ F    M+P VSATR+ VG  MGW TN NYT WA+ 
Sbjct: 1  MEGRKKRV--FASTISPTMVFLLLGFAVLVMLPMVSATRFMVGGRMGWNTNFNYTTWAKG 58

Query: 57 KHFYNGDWL 65
          KHFYNGDWL
Sbjct: 59 KHFYNGDWL 67


>A1YMX0_BRACM (tr|A1YMX0) Lamin OS=Brassica campestris PE=2 SV=1
          Length = 170

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 19 AVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFSFLTIFLLHN 78
          AV++  V  VPEV+A ++TVG N  W  N+NYTIWAQ KHFY GDWL    F+     HN
Sbjct: 10 AVILAFVVAVPEVTAKKYTVGENKFWDPNINYTIWAQGKHFYLGDWLY---FVFDRNQHN 66

Query: 79 VLK 81
          +L+
Sbjct: 67 ILE 69


>D7MVI7_ARALY (tr|D7MVI7) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_333044 PE=4 SV=1
          Length = 140

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 11 RSSMMVPVAVVILMVFM-VPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFS 69
          RS +++   V+  +V   +PEV+A ++TVG    W  N+NYTIWAQ KHFY GDWL    
Sbjct: 3  RSIVLIAAVVLAFLVAAPMPEVTAKKYTVGDKKFWNPNINYTIWAQGKHFYVGDWLY--- 59

Query: 70 FLTIFLLHNVLK 81
          F+     HN+L+
Sbjct: 60 FVFYRDQHNILE 71


>Q2HWC3_MEDTR (tr|Q2HWC3) Blue (Type 1) copper domain OS=Medicago truncatula
          GN=MtrDRAFT_AC147482g47v2 PE=4 SV=2
          Length = 150

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 1  MDGTRRGCGFRSSMMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFY 60
          M G +       +MM+ + V  ++V M+P  SA RW VG   GWTTN+NY+ W +  +FY
Sbjct: 1  MKGIKLLVSMSQAMMILLLVCTVLV-MLPVASAKRWIVGDKKGWTTNINYSTWIEGNNFY 59

Query: 61 NGDWL 65
          NGDWL
Sbjct: 60 NGDWL 64


>Q9MAC1_ARATH (tr|Q9MAC1) At3g01070 OS=Arabidopsis thaliana GN=At3g01070 PE=2
          SV=1
          Length = 167

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 11 RSSMMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          R +++V  AV+  ++     V+A RWTVG N  W  N+NYTIWAQDKHFY  DWL
Sbjct: 3  RVAVLVAGAVLAFLL-AATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWL 56


>D7M7C0_ARALY (tr|D7M7C0) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_909508 PE=4 SV=1
          Length = 172

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 28 VPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFSFLTIFLLHNVLK 81
          +PEV+A ++TVG N  W  N+NYTIWAQ KHFY GDWL    F+     HN+L+
Sbjct: 21 MPEVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLY---FVYDRNQHNILE 71


>Q9STZ8_ARATH (tr|Q9STZ8) At4g12880 OS=Arabidopsis thaliana GN=T20K18.230 PE=1
          SV=1
          Length = 141

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 12 SSMMVPVAVVI--LMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFS 69
           SM++  AVV+  L+   +PEV+A ++ VG    W  N+NYT+WAQ KHFY GDWL    
Sbjct: 3  RSMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLY--- 59

Query: 70 FLTIFLLHNVLK 81
          F+     HN+L+
Sbjct: 60 FVFYRDQHNILE 71


>Q39040_ARATH (tr|Q39040) Lamin OS=Arabidopsis thaliana PE=2 SV=1
          Length = 134

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 13 SMMVPVAVVI--LMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFSF 70
          SM++  AVV+  L+   +PEV+A ++ VG    W  N+NYT+WAQ KHFY GDWL    F
Sbjct: 4  SMVLISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLY---F 60

Query: 71 LTIFLLHNVLK 81
          +     HN+L+
Sbjct: 61 VFYRDQHNILE 71


>D7LAJ4_ARALY (tr|D7LAJ4) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_317083 PE=4 SV=1
          Length = 173

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 30 EVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          EV+A +WTVG N  W  N+NYTIWAQDKHFY  DWL
Sbjct: 20 EVAAKKWTVGDNKFWNPNINYTIWAQDKHFYLDDWL 55


>C6SVN5_SOYBN (tr|C6SVN5) Putative uncharacterized protein OS=Glycine max PE=2
          SV=1
          Length = 169

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 27 MVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
          M+PE SAT++TVG+N  W  N+NYT WA+ KHFY GDWL
Sbjct: 19 MLPEASATKFTVGNNQFWNPNINYTEWAKGKHFYLGDWL 57


>Q8L9G8_ARATH (tr|Q8L9G8) Putative lamin OS=Arabidopsis thaliana PE=2 SV=1
          Length = 167

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 26/36 (72%)

Query: 30 EVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWL 65
           V+A R TVG N  W  N+NYTIWAQDKHFY  DWL
Sbjct: 21 NVTAKRRTVGDNKFWNPNINYTIWAQDKHFYLDDWL 56


>Q39370_BRAOL (tr|Q39370) Lamin OS=Brassica oleracea PE=2 SV=1
          Length = 165

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 11 RSSMMVPVAVVILMVFM-VPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLCKFS 69
          R ++++   V+  +V   VPEV+A ++ VG    W  ++NY  W Q KHFY GDWL    
Sbjct: 3  RFTVLIAAPVLAFLVAAPVPEVTAKKYLVGDKKFWNPDINYDTWVQGKHFYLGDWL---Y 59

Query: 70 FLTIFLLHNVLK 81
          F+     HN+L+
Sbjct: 60 FVYYRDQHNILE 71