Jatropha Genome Database

JcCB0273241.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0273241.10 - phase: 2 /partial
         (64 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RS49_RICCO (tr|B9RS49) Lupus la ribonucleoprotein, putative OS...    57   7e-07

>B9RS49_RICCO (tr|B9RS49) Lupus la ribonucleoprotein, putative OS=Ricinus
           communis GN=RCOM_0802990 PE=4 SV=1
          Length = 494

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 5   GEAEKEYWSLLRGNQEKHWQDXXXXXXXXXXXXXXXXHSRYRDNFSGSNRPNKAQKT 61
           GEAEKEYWSLLRGNQEKH                   HSR RDN+SG  RPNKAQK 
Sbjct: 440 GEAEKEYWSLLRGNQEKHRG-NMGNRGRGGKHFRGGKHSRSRDNYSGG-RPNKAQKV 494