Jatropha Genome Database

JcCB0250351.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0250351.10 + phase: 0 
         (126 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RN24_RICCO (tr|B9RN24) Putative uncharacterized protein OS=Ric...    94   7e-18

>B9RN24_RICCO (tr|B9RN24) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1342750 PE=4 SV=1
          Length = 120

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 11/128 (8%)

Query: 1   MIILNRRDQMAHNLSIKLSELAIREWEGEERENLIVDSVDEKAKTETTTNL--DCTTPTA 58
           MI   + D      SI ++++ I   EG E  NL     +EK+ TE TT    DCTTPTA
Sbjct: 2   MIHCRQDDNNPRTPSINIADIVI---EGGENGNL-TPVEEEKSNTEKTTTAVSDCTTPTA 57

Query: 59  KENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMFDIGINKVSSKVS 118
           KE KIPDVMTCPPAP+KRK SL+V     N+V   K+FF SP L+VM  +  ++VSSK+S
Sbjct: 58  KEYKIPDVMTCPPAPRKRKVSLSV---KRNRVRVVKQFFTSPELEVMLGMS-SRVSSKIS 113

Query: 119 GSTPKRHR 126
            S+ +R R
Sbjct: 114 WSS-RRFR 120