Jatropha Genome Database
- JcCB0237541.20
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0237541.20 + phase: 0 /pseudo/partial
(56 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D7TCG3_VITVI (tr|D7TCG3) Whole genome shotgun sequence of line P... 81 3e-14
B9MSY1_POPTR (tr|B9MSY1) PAF1 complex component (Fragment) OS=Po... 81 4e-14
B9RRC3_RICCO (tr|B9RRC3) Tpr repeat nuclear phosphoprotein, puta... 81 5e-14
A5B152_VITVI (tr|A5B152) Putative uncharacterized protein OS=Vit... 80 7e-14
B5X0I6_ARATH (tr|B5X0I6) VERNALIZATION INDEPENDENCE 6 OS=Arabido... 80 8e-14
Q8S8H1_ARATH (tr|Q8S8H1) Putative TPR repeat nuclear phosphoprot... 80 9e-14
Q8VYL2_ARATH (tr|Q8VYL2) Putative TPR repeat nuclear phosphoprot... 80 1e-13
D7LA62_ARALY (tr|D7LA62) Putative uncharacterized protein OS=Ara... 79 1e-13
C5YE49_SORBI (tr|C5YE49) Putative uncharacterized protein Sb06g0... 73 1e-11
Q8H9E4_ORYSJ (tr|Q8H9E4) Putative TPR-containing nuclear phospho... 72 1e-11
B8B5Z7_ORYSI (tr|B8B5Z7) Putative uncharacterized protein OS=Ory... 72 1e-11
B9FX65_ORYSJ (tr|B9FX65) Putative uncharacterized protein OS=Ory... 72 2e-11
A9RSJ1_PHYPA (tr|A9RSJ1) Paf1 complex protein OS=Physcomitrella ... 64 5e-09
D0N009_PHYIN (tr|D0N009) RNA polymerase-associated protein CTR9 ... 54 4e-06
>D7TCG3_VITVI (tr|D7TCG3) Whole genome shotgun sequence of line PN40024,
scaffold_16.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00015096001 PE=4 SV=1
Length = 1091
Score = 81.3 bits (199), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 47
>B9MSY1_POPTR (tr|B9MSY1) PAF1 complex component (Fragment) OS=Populus
trichocarpa GN=PAFC901 PE=4 SV=1
Length = 1056
Score = 80.9 bits (198), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 47
>B9RRC3_RICCO (tr|B9RRC3) Tpr repeat nuclear phosphoprotein, putative
OS=Ricinus communis GN=RCOM_0712290 PE=4 SV=1
Length = 1065
Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 47
>A5B152_VITVI (tr|A5B152) Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_017914 PE=4 SV=1
Length = 788
Score = 80.1 bits (196), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 47
>B5X0I6_ARATH (tr|B5X0I6) VERNALIZATION INDEPENDENCE 6 OS=Arabidopsis thaliana
GN=VIP6 PE=2 SV=1
Length = 1091
Score = 80.1 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIA 47
>Q8S8H1_ARATH (tr|Q8S8H1) Putative TPR repeat nuclear phosphoprotein
OS=Arabidopsis thaliana GN=At2g06210 PE=4 SV=1
Length = 1115
Score = 79.7 bits (195), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIA 47
>Q8VYL2_ARATH (tr|Q8VYL2) Putative TPR repeat nuclear phosphoprotein
OS=Arabidopsis thaliana GN=At2g06210 PE=2 SV=1
Length = 740
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIA 47
>D7LA62_ARALY (tr|D7LA62) Putative uncharacterized protein OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_480219 PE=4 SV=1
Length = 1058
Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
NSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Sbjct: 10 NSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIA 47
>C5YE49_SORBI (tr|C5YE49) Putative uncharacterized protein Sb06g025910
OS=Sorghum bicolor GN=Sb06g025910 PE=4 SV=1
Length = 1069
Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/37 (91%), Positives = 35/37 (94%)
Query: 2 SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
+EEEVRVALDQLP DASDILDILKAEQAPL LWLIIA
Sbjct: 11 TEEEVRVALDQLPHDASDILDILKAEQAPLHLWLIIA 47
>Q8H9E4_ORYSJ (tr|Q8H9E4) Putative TPR-containing nuclear phosphoprotein
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 1069
Score = 72.4 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/37 (91%), Positives = 35/37 (94%)
Query: 2 SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
+EEEVRVALDQLP DASDILDILKAEQAPL LWLIIA
Sbjct: 11 TEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIA 47
>B8B5Z7_ORYSI (tr|B8B5Z7) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_25970 PE=4 SV=1
Length = 1174
Score = 72.4 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/37 (91%), Positives = 35/37 (94%)
Query: 2 SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
+EEEVRVALDQLP DASDILDILKAEQAPL LWLIIA
Sbjct: 161 TEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIA 197
>B9FX65_ORYSJ (tr|B9FX65) Putative uncharacterized protein OS=Oryza sativa
subsp. japonica GN=OsJ_24219 PE=4 SV=1
Length = 1053
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/37 (91%), Positives = 35/37 (94%)
Query: 2 SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
+EEEVRVALDQLP DASDILDILKAEQAPL LWLIIA
Sbjct: 11 TEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIA 47
>A9RSJ1_PHYPA (tr|A9RSJ1) Paf1 complex protein OS=Physcomitrella patens subsp.
patens GN=PAFC1501 PE=4 SV=1
Length = 999
Score = 63.9 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA 38
N+ EEVRVAL++LP DA+DILDILKAEQAPL+LWL A
Sbjct: 10 NTSEEVRVALERLPADATDILDILKAEQAPLNLWLTFA 47
>D0N009_PHYIN (tr|D0N009) RNA polymerase-associated protein CTR9
OS=Phytophthora infestans T30-4 GN=PITG_03348 PE=4 SV=1
Length = 1166
Score = 54.3 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 1 NSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAV 39
NSE+ V V +D+LP D +DI+DIL+AE APLD+WL AV
Sbjct: 20 NSEQAVEVFVDELPEDVNDIIDILRAEVAPLDVWLQFAV 58