Jatropha Genome Database

JcCB0237541.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237541.10 - phase: 0 
         (94 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9MSX9_POPTR (tr|B9MSX9) Predicted protein OS=Populus trichocarp...    60   1e-07

>B9MSX9_POPTR (tr|B9MSX9) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_589271 PE=4 SV=1
          Length = 292

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 1  MESNLPQNPPRKHKFVPKAPPRRAPXXXXXXXXXXXXDAVQAMNLMKQFQ 50
          MES  PQ+  RK++F+PKAPPRR P            D +QAMNLMKQFQ
Sbjct: 1  MESKPPQDAQRKYRFMPKAPPRRVPKPEVKTEKVENVDTLQAMNLMKQFQ 50