Jatropha Genome Database

JcCB0215961.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.30 - phase: 1 /partial
         (52 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HDG5_POPTR (tr|B9HDG5) Predicted protein OS=Populus trichocarp...    96   2e-18
B9RG30_RICCO (tr|B9RG30) Pentatricopeptide repeat-containing pro...    87   7e-16
D7TQ74_VITVI (tr|D7TQ74) Whole genome shotgun sequence of line P...    84   7e-15
A5BZP9_VITVI (tr|A5BZP9) Putative uncharacterized protein OS=Vit...    82   1e-14

>B9HDG5_POPTR (tr|B9HDG5) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_761906 PE=4 SV=1
          Length = 120

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 48/52 (92%)

Query: 1   DESTYTTSYNYYMHGYNESVHGYFPDQAYATVDDNTVHLFSEDNVHAYCTIM 52
           DE+TY TSYNYY HG+NESVHGYFPDQAY TV D+TVHLFS+DNVHAYC+IM
Sbjct: 69  DETTYMTSYNYYRHGFNESVHGYFPDQAYCTVPDDTVHLFSDDNVHAYCSIM 120


>B9RG30_RICCO (tr|B9RG30) Pentatricopeptide repeat-containing protein, putative
           OS=Ricinus communis GN=RCOM_1438770 PE=4 SV=1
          Length = 686

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/52 (92%), Positives = 50/52 (96%)

Query: 1   DESTYTTSYNYYMHGYNESVHGYFPDQAYATVDDNTVHLFSEDNVHAYCTIM 52
           DE+TYTTSYNYY HG+NESVHGYFPDQAY TVDDNTVHLFSEDNVHAYCTIM
Sbjct: 635 DETTYTTSYNYYRHGFNESVHGYFPDQAYETVDDNTVHLFSEDNVHAYCTIM 686


>D7TQ74_VITVI (tr|D7TQ74) Whole genome shotgun sequence of line PN40024,
           scaffold_40.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00025864001 PE=4 SV=1
          Length = 162

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 45/53 (84%), Gaps = 2/53 (3%)

Query: 1   DESTYTTSYNYYMHGYNESVHGYFPDQAYAT-VDDNTVHLFSEDNVHAYCTIM 52
           DESTYT+SYNYYMHGYNESVHGYFPD  Y   +DD T H+FS+DNVHA C+IM
Sbjct: 111 DESTYTSSYNYYMHGYNESVHGYFPDPPYPILIDDQTAHIFSDDNVHA-CSIM 162


>A5BZP9_VITVI (tr|A5BZP9) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_012851 PE=4 SV=1
          Length = 110

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 45/53 (84%), Gaps = 2/53 (3%)

Query: 1   DESTYTTSYNYYMHGYNESVHGYFPDQAYAT-VDDNTVHLFSEDNVHAYCTIM 52
           DESTYT+SYNYYMHGYNESVHGYFPD  Y   +DD T H+FS+DNVHA C+IM
Sbjct: 59  DESTYTSSYNYYMHGYNESVHGYFPDPPYPILIDDQTAHIFSDDNVHA-CSIM 110