Jatropha Genome Database

JcCB0189361.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189361.20 - phase: 0 /pseudo/partial
         (77 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q0WSP7_ARATH (tr|Q0WSP7) Putative uncharacterized protein OS=Ara...    99   2e-19
C4J0P5_MAIZE (tr|C4J0P5) Putative uncharacterized protein OS=Zea...    85   2e-15

>Q0WSP7_ARATH (tr|Q0WSP7) Putative uncharacterized protein OS=Arabidopsis
          thaliana PE=4 SV=1
          Length = 84

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 63/77 (81%)

Query: 1  GTDILEPELRRDILREVKFAGIVPVPVAAITAGSAC*SNHSMVSPSDL*PSSRVSWKTLA 60
          G + +EP LRR++ +   FAG+VPVPVAA+ AGSAC S+HS+VSPSDL  +SRVSWKT A
Sbjct: 8  GAERVEPLLRREMFKVEIFAGMVPVPVAAMIAGSACWSSHSIVSPSDLCCNSRVSWKTRA 67

Query: 61 AQRAGMRILRPRPSTFV 77
          AQ AG+RILRPRPST +
Sbjct: 68 AQIAGIRILRPRPSTLM 84


>C4J0P5_MAIZE (tr|C4J0P5) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 345

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 50/61 (81%)

Query: 17  VKFAGIVPVPVAAITAGSAC*SNHSMVSPSDL*PSSRVSWKTLAAQRAGMRILRPRPSTF 76
           VK AG+VPVPVAAITAGSAC S+HSMVSPS L PSSRVSW T AA  AG+R+ RP PST 
Sbjct: 213 VKLAGMVPVPVAAITAGSACCSSHSMVSPSVLCPSSRVSWNTRAAHSAGIRMRRPLPSTL 272

Query: 77  V 77
           V
Sbjct: 273 V 273