Jatropha Genome Database

JcCB0189041.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189041.10 + phase: 1 /pseudo/partial
         (85 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SZ76_RICCO (tr|B9SZ76) Pentatricopeptide repeat-containing pro...    65   2e-09

>B9SZ76_RICCO (tr|B9SZ76) Pentatricopeptide repeat-containing protein, putative
           OS=Ricinus communis GN=RCOM_0484640 PE=4 SV=1
          Length = 313

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 38  NLVCSDGPSENYVAFSSVFASAERWEDVEMVRKEMKVGRIET 79
           N V SD  SE+YVA S+V+ASAERWEDVE++RKEMKV R+ET
Sbjct: 253 NSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVKRLET 294