Jatropha Genome Database

JcCB0183341.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183341.10 + phase: 0 /partial
         (50 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RP49_RICCO (tr|B9RP49) Phopholipase d alpha, putative OS=Ricin...    86   1e-15

>B9RP49_RICCO (tr|B9RP49) Phopholipase d alpha, putative OS=Ricinus communis
          GN=RCOM_0924040 PE=4 SV=1
          Length = 817

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/54 (70%), Positives = 45/54 (83%), Gaps = 4/54 (7%)

Query: 1  MPRLLHGTLSVTVFEIDIIQNGCGFNLFSK----QNCGKRFLSKMKRMVLCRPE 50
          M  LLHGTLSVT+FE+D +Q GCGFN FS+    QNCGKRFLS++KR+VLCRPE
Sbjct: 1  MLGLLHGTLSVTIFEVDKLQTGCGFNFFSRGPGQQNCGKRFLSQVKRVVLCRPE 54