Jatropha Genome Database
- JcCB0180631.20
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0180631.20 - phase: 0 /pseudo
(278 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9N0T6_POPTR (tr|B9N0T6) Predicted protein OS=Populus trichocarp... 78 1e-12
B9N0S7_POPTR (tr|B9N0S7) Predicted protein OS=Populus trichocarp... 77 3e-12
B9HK49_POPTR (tr|B9HK49) Predicted protein OS=Populus trichocarp... 75 7e-12
Q2HS67_MEDTR (tr|Q2HS67) Cyclin-like F-box; F-box protein intera... 74 1e-11
B9HK48_POPTR (tr|B9HK48) Predicted protein OS=Populus trichocarp... 72 9e-11
B9SJF0_RICCO (tr|B9SJF0) Ubiquitin-protein ligase, putative OS=R... 68 8e-10
Q2HS69_MEDTR (tr|Q2HS69) Cyclin-like F-box; F-box protein intera... 68 1e-09
B9HMA7_POPTR (tr|B9HMA7) Predicted protein OS=Populus trichocarp... 66 3e-09
>B9N0T6_POPTR (tr|B9N0T6) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_783326 PE=4 SV=1
Length = 374
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 60/227 (26%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPK-------- 55
++P EI+ +I S+LP K L+RFKC+SK+ SLIS P F+++H+ R++ D
Sbjct: 7 KLPSEIISEILSRLPVKCLVRFKCVSKTWRSLISHPEFVKNHLKRTKEDTNANHYKIFLS 66
Query: 56 -----YVCGSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPT 110
+ +FD + + +K P+ + + +IL SC+G++ N P
Sbjct: 67 TDPHLSIDPEAYFDADDNLLTTQLKFPVS----YPEYSYIEILGSCNGLVCGLIHDN-PL 121
Query: 111 LYSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESG-DYV 169
+Y +WNP RE R +P S D
Sbjct: 122 IY------------------------------------IWNPSTRESRELAIPGSSEDDA 145
Query: 170 SYGLGYDSVTDDYKVVQCGI--SKNHLIKXNA---LIVLSLKSNSMR 211
YG GYD DDYK+V+ I S N N+ + V +LKSN R
Sbjct: 146 FYGFGYDVKLDDYKIVRVSISTSTNSTDGSNSETKVEVFTLKSNIWR 192
>B9N0S7_POPTR (tr|B9N0S7) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_597059 PE=4 SV=1
Length = 360
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 53/223 (23%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD-------LPKY 56
++P+EI+ I + LPAKSL++FKC+ +S SLIS P F + H+ R+ D L
Sbjct: 3 KLPQEIIVDILTYLPAKSLIKFKCVCRSWRSLISDPQFAKLHLKRAHEDENINRQRLLIA 62
Query: 57 VCGSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHK-----ILCSCDGVILLRARINTPTL 111
Y D A + + +K P N L SCDG++ + ++
Sbjct: 63 ADPLYSVDFEAASDGDNGNTLVKLSYPNAESHNDSFAVGLFLGSCDGIVCILNEVD---- 118
Query: 112 YSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDY--V 169
S+++WNP RE + P S +
Sbjct: 119 ----------------------------------SVVLWNPSTRESKKLSGPTSSLHKDF 144
Query: 170 SYGLGYDSVTDDYKVVQCGISKNHLIKXNALI-VLSLKSNSMR 211
S GLGYDS TDDYK+V + ++ V +LK+N+ R
Sbjct: 145 STGLGYDSSTDDYKMVIASSATASTRSDQIMVEVFTLKTNTWR 187
>B9HK49_POPTR (tr|B9HK49) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_563457 PE=4 SV=1
Length = 425
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 39/185 (21%)
Query: 5 VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGSYFFD 64
+PE++V I KLP KS+LRF+C+SKS NSLI+SP FI+ H +++ + + G
Sbjct: 50 IPEDVVMSILLKLPIKSILRFRCVSKSCNSLITSPYFIKKHFAKAKQLILR--VGKPVAS 107
Query: 65 VNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEANALRMC 124
V+ ++ + L Q+ F K+ SC+GV+ L ++ K + +
Sbjct: 108 VSLHLDNDSLDRCL--QLDFCQPNAFKVNGSCNGVVCLSG------IHPKLDASGC---- 155
Query: 125 XXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVS---YGLGYDSVTDD 181
+I+WNP IR+ P P S ++ G+GYD TDD
Sbjct: 156 ----------------------VILWNPSIRKTLHLPPPRSYARIATTLLGIGYDPRTDD 193
Query: 182 YKVVQ 186
YKV +
Sbjct: 194 YKVAR 198
>Q2HS67_MEDTR (tr|Q2HS67) Cyclin-like F-box; F-box protein interaction domain
OS=Medicago truncatula GN=MtrDRAFT_AC155883g28v2 PE=4
SV=1
Length = 386
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 48/218 (22%)
Query: 6 PEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGSYFFDV 65
P+E++ +I S+LP K+L+RF+CL+KS N+LIS PNF++ H+ +S+ + P +Y +
Sbjct: 11 PDELIVEIISRLPVKTLIRFRCLNKSFNTLISDPNFVKIHLKKSERN-PHLAVPAYRYAE 69
Query: 66 NTA-VEAKPVKSPLKQQMPFLN-----QTNH-----KILCSCDGVILLRARINTPTLYSK 114
N + A P+ L+ ++ + NH +++ SC+G++ L R +P
Sbjct: 70 NEPHLLAFPISRLLENSSTTIHYDPCYRLNHSDGSWRVVGSCNGLLCLLDRNTSPA---- 125
Query: 115 DNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVSYGLG 174
R+C +WNP R+ F + Y + G
Sbjct: 126 -----GQRLC------------------------LWNPATRKKSKFVLGPR-KYTKFFFG 155
Query: 175 YDSVTDDYKVVQCGISKNHLIKXNALI-VLSLKSNSMR 211
YD +T+ YKV+ + K + NA++ VLS+ ++S R
Sbjct: 156 YDYLTETYKVIAFRV-KLDMGNGNAMVKVLSIGNSSWR 192
>B9HK48_POPTR (tr|B9HK48) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_765036 PE=4 SV=1
Length = 377
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 54/202 (26%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPK----YVCG 59
R+PE +V +I K P KS+LRF+C+S+S NSLI+ P FI+ H+ +++ + + V
Sbjct: 13 RIPEHVVTKILLKSPIKSILRFRCVSQSWNSLITLPYFIKEHLAKAKPLILRTENPVVSL 72
Query: 60 SYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEAN 119
S D + + +K F +I+ SC+GV+ LR R Y + + +
Sbjct: 73 SLLIDNDRLDRSSQIK--------FHRPYAFEIVASCNGVVCLRGR------YPEFDGSR 118
Query: 120 ALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVS-----YGLG 174
L I+WNP I++ P P S + S GLG
Sbjct: 119 RL--------------------------ILWNPSIKKTLRLPPPRS--FASTVPTLLGLG 150
Query: 175 YDSVTDDYKV---VQCGISKNH 193
YD +DDYKV V+ G S H
Sbjct: 151 YDPRSDDYKVPRIVRLGNSAEH 172
>B9SJF0_RICCO (tr|B9SJF0) Ubiquitin-protein ligase, putative OS=Ricinus communis
GN=RCOM_0526770 PE=4 SV=1
Length = 414
Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 4 RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQ---GDLPKYVCGS 60
++P E++ +I ++LP LLRF+ +SKS + I PNFI++H+ +S+ +L GS
Sbjct: 4 KLPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIFAGS 63
Query: 61 ---YFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNE 117
YF++VN +K + P N KI+ SC+G++
Sbjct: 64 HPDYFYNVNLDSLNSIIKLENPIKGPTDASHNIKIVGSCNGLLCF--------------- 108
Query: 118 ANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYV-------- 169
NA I + NP R++++ P V
Sbjct: 109 GNA-----------------------SGRITLMNPSTRKHKVLPFLRMDASVKGKSVWGA 145
Query: 170 -SYGLGYDSVTDDYKVVQCGISKNHLIK--XNALIVLSLKSNSMRK 212
++G G DSV DDYKV++ G + ++ +V SLKSNS RK
Sbjct: 146 WAFGFGCDSVHDDYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRK 191
>Q2HS69_MEDTR (tr|Q2HS69) Cyclin-like F-box; F-box protein interaction domain
OS=Medicago truncatula GN=MtrDRAFT_AC155883g26v2 PE=4
SV=1
Length = 368
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 47/192 (24%)
Query: 6 PEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGSYF--F 63
P+E++ +I S LP K+L+RF+CL+KS N+LIS PNF++ H+ +S+ + SY +
Sbjct: 35 PDELIVEIISHLPVKTLIRFRCLNKSFNTLISDPNFVKIHLKKSERN-QHLAVFSYRNPY 93
Query: 64 DVNTAVEAKPVKSPLKQQMPFLN-----QTNHK-----ILCSCDGVILLRARINTPTLYS 113
+ + PV S ++ Q NH ++ SC+G++ L R +P
Sbjct: 94 NKTNHLLTFPVSSLHGNSSITIHYDPCYQLNHGDGSWVVVGSCNGLLCLLDRKASPA--- 150
Query: 114 KDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVSYGL 173
R+C +WNP R F +P++ Y ++ L
Sbjct: 151 ------RQRLC------------------------LWNPATRTKSEFVLPQTS-YSTFFL 179
Query: 174 GYDSVTDDYKVV 185
GY +T+ YKVV
Sbjct: 180 GYYYLTETYKVV 191
>B9HMA7_POPTR (tr|B9HMA7) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_565298 PE=4 SV=1
Length = 445
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 59/209 (28%)
Query: 5 VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSH------VPRSQGDL-PKYV 57
+P E++ +I S+LPAKSL++F+C+SKS SLIS+P FI++H + R+ D P+ V
Sbjct: 79 LPHELIIEILSRLPAKSLIKFRCVSKSFKSLISNPQFIKTHLEKVKNLSRNDPDFSPEIV 138
Query: 58 CGSY--FFDVNT----AVEAKPVKSPLKQQMPFLNQTNHK--ILCSCDGVILLRARINTP 109
S F + + +V PV + L ++ SCDG++ L + +
Sbjct: 139 ISSSEPLFRLKSCSLYSVYNNPVTDAVVIDYYLLKDIYRYDWVVGSCDGLVCLGIKQDF- 197
Query: 110 TLYSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFP----MPES 165
+++WNP R + P +
Sbjct: 198 -------------------------------------VVLWNPSTRVFNRLPDLGFAKKL 220
Query: 166 GDYVSYGLGYDSVTDDYKVVQ--CGISKN 192
G Y +G GYDS DDYKV+ C ++K+
Sbjct: 221 GSYTVFGFGYDSQIDDYKVLAMFCFLTKS 249