Jatropha Genome Database

JcCB0174221.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174221.10 - phase: 0 
         (70 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9ST76_RICCO (tr|B9ST76) DNA binding protein, putative OS=Ricinu...    87   8e-16
B9N7F8_POPTR (tr|B9N7F8) Predicted protein OS=Populus trichocarp...    73   1e-11
B9GVQ5_POPTR (tr|B9GVQ5) Predicted protein OS=Populus trichocarp...    57   5e-07

>B9ST76_RICCO (tr|B9ST76) DNA binding protein, putative OS=Ricinus communis
          GN=RCOM_0684820 PE=4 SV=1
          Length = 1374

 Score = 86.7 bits (213), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 47/54 (87%)

Query: 1  MGVSFKISKTGTRFRAKPVIPPEPALDEVSGNSKESSVIGSKNESSSRKLQVII 54
          MGVSFK+SKTGTRFR KP+  PEPALDE S N+KESS+IGSKNESS RKL+V I
Sbjct: 1  MGVSFKVSKTGTRFRPKPITLPEPALDEASENTKESSLIGSKNESSKRKLEVDI 54


>B9N7F8_POPTR (tr|B9N7F8) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_785953 PE=4 SV=1
          Length = 1341

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 41/51 (80%)

Query: 1  MGVSFKISKTGTRFRAKPVIPPEPALDEVSGNSKESSVIGSKNESSSRKLQ 51
          MGVSFK+SKTGTRFR KPV   +   DEVS N KESSVIGSKNESS+RK Q
Sbjct: 1  MGVSFKVSKTGTRFRPKPVFQSDTVPDEVSENFKESSVIGSKNESSTRKRQ 51


>B9GVQ5_POPTR (tr|B9GVQ5) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_756703 PE=4 SV=1
          Length = 1396

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 1  MGVSFKISKTGTRFRAKPVIPPEPALDEVSGNSKESSVIGSKNESSSRK 49
          MGVSFK+SKTGTRFR+KP +  +  LDEVS NS+ESSVIGSKNESS+RK
Sbjct: 1  MGVSFKVSKTGTRFRSKPFVQSDTVLDEVSENSEESSVIGSKNESSTRK 49