Jatropha Genome Database

JcCB0170011.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170011.10 + phase: 0 
         (57 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RUM7_RICCO (tr|B9RUM7) Pectate lyase, putative OS=Ricinus comm...    65   2e-09

>B9RUM7_RICCO (tr|B9RUM7) Pectate lyase, putative OS=Ricinus communis
          GN=RCOM_0855020 PE=4 SV=1
          Length = 431

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 40/52 (76%), Gaps = 3/52 (5%)

Query: 1  MELAKIVLIFVLFVSTIIPNLTAADDTIGVYDEVWKKRQQEAKSHLMDAYVA 52
          ME+ K+V+IFVL  ++IIP L A    IG YDEVWKKR +EAK ++MDAYVA
Sbjct: 1  MEVEKLVVIFVLAFASIIPILNA---DIGYYDEVWKKRAEEAKKNMMDAYVA 49