Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S581_RICCO (tr|B9S581) Phytochrome-interacting factor, putativ...   218   5e-55
B9GR94_POPTR (tr|B9GR94) Predicted protein OS=Populus trichocarp...   201   7e-50
D7U3D2_VITVI (tr|D7U3D2) Whole genome shotgun sequence of line P...   129   4e-28
D7L5A8_ARALY (tr|D7L5A8) Putative uncharacterized protein OS=Ara...    93   5e-17
A2Q5K3_MEDTR (tr|A2Q5K3) Helix-loop-helix DNA-binding OS=Medicag...    82   6e-14

>B9S581_RICCO (tr|B9S581) Phytochrome-interacting factor, putative OS=Ricinus
           communis GN=RCOM_1722420 PE=4 SV=1
          Length = 572

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/264 (49%), Positives = 153/264 (57%), Gaps = 33/264 (12%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKSITS-EDEIMELLWQNGQVVVQSQTQMSLKKL- 58
           M+HYVPDFEMD+DCAIPTSST  RPKKSITS EDE MELLW NGQVVVQ+Q   SLKK  
Sbjct: 1   MSHYVPDFEMDDDCAIPTSSTLVRPKKSITSTEDEFMELLWHNGQVVVQTQ---SLKKPQ 57

Query: 59  -PHSKYDDAVLPVEASNTRE-IRSTQE---------------HHQQQQHLFMQEDEMASW 101
             H KYDDAV+PV+ SN R+ IR+ QE               ++    +LFMQEDEMASW
Sbjct: 58  QQHHKYDDAVIPVDQSNPRDVIRTAQEHHNHNNNSNNNNNNNNNTHNSNLFMQEDEMASW 117

Query: 102 LHYPLNDTNFDQDFCADLLYPXXXXXX--------XXXXXXXXXXXXXIQNXXXXXXXXX 153
           LHYP+NDTNFDQDFCADLLYP                           +++         
Sbjct: 118 LHYPINDTNFDQDFCADLLYPTSAAAACVTSTTTNTTTTTTTNNSFAPVRSLHNPEIRSQ 177

Query: 154 XXXXXXXXXXXXXXXXXXXXXXXVHNFAYFSKHRARGG--VLEPGPSNLRHAVRESTVVD 211
                                  V NFAYFS+HRAR G  V E GPS ++   RESTVVD
Sbjct: 178 QPPVSATATASRPPIPPTRRAQVVQNFAYFSRHRARDGANVAESGPSKVKPVARESTVVD 237

Query: 212 SSDTP-AMPSESRVSEAAVARNTA 234
           SS+TP  +  +SR+SEAA  R+T+
Sbjct: 238 SSETPEGIALDSRISEAAFGRSTS 261


>B9GR94_POPTR (tr|B9GR94) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_756351 PE=4 SV=1
          Length = 615

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 137/244 (56%), Gaps = 12/244 (4%)

Query: 1   MNHYVPDFEMDEDCAIPTS-STFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLP 59
           MN YVPDFEMD+D ++P   ST TRP+K    E+EIMELLWQNGQVV+ SQ        P
Sbjct: 1   MNPYVPDFEMDDDYSLPPPPSTHTRPRKPAMQEEEIMELLWQNGQVVMHSQRSQKKSSPP 60

Query: 60  HSKYDDAVLPV-EASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCAD 118
            S+ DDAVLP  +   T+EIRS+ +  Q+  HLFMQEDEMASWL++PLNDTNFD DFCAD
Sbjct: 61  PSELDDAVLPADQLPGTKEIRSSHDQQQEHHHLFMQEDEMASWLNHPLNDTNFDHDFCAD 120

Query: 119 LLYPXXXXXXXXXXXXXXXXXXXIQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVH 178
           LLYP                     +                                V 
Sbjct: 121 LLYPPTASTASITREAAVTNAAA--STVRGATQRMEARSYPAVSAPRPPIPPVRRAEVVQ 178

Query: 179 NFAYFSKHRARGGVLEPGPSNLRHAVRESTVVDSSDTPAMPSESRVSEAAVAR---NTAG 235
           NFAYFS+HRA GGV E G SN +  VRESTVVDS +TP     +R+SE A AR   NT G
Sbjct: 179 NFAYFSRHRA-GGVSESGRSNSKSVVRESTVVDSCETPT----ARISETAFARSADNTCG 233

Query: 236 VSSG 239
             +G
Sbjct: 234 TING 237


>D7U3D2_VITVI (tr|D7U3D2) Whole genome shotgun sequence of line PN40024,
           scaffold_5.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00028516001 PE=4 SV=1
          Length = 479

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 85/126 (67%), Gaps = 17/126 (13%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKS--ITSEDEIMELLWQNGQVVVQSQTQMSLKKL 58
           MNH VPDFE+D++ AIP     TRPKKS  +  +DEIMELLWQNGQVV+Q Q Q S KK 
Sbjct: 1   MNHCVPDFEVDDEDAIP----LTRPKKSAAMVEDDEIMELLWQNGQVVMQIQNQRSFKKS 56

Query: 59  PHSKY--DDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFC 116
             SK+   DAVLP E S   +IRS+    +    LFMQEDEMASWLHYPL+      DFC
Sbjct: 57  QPSKFPIQDAVLPPEQS---KIRSSAPVDESSAQLFMQEDEMASWLHYPLD------DFC 107

Query: 117 ADLLYP 122
           ADLL P
Sbjct: 108 ADLLDP 113


>D7L5A8_ARALY (tr|D7L5A8) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_319546 PE=4 SV=1
          Length = 486

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 13/130 (10%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTR---PKKSITS----EDEIMELLWQNGQVVVQSQT-- 51
           M+H+VPDF+ D+D     ++  +    P+KSIT+    +D++MELLWQNGQVVVQ+Q   
Sbjct: 1   MHHFVPDFDTDDDYVNTNNNNSSLNHLPRKSITTMGEDDDDLMELLWQNGQVVVQNQRLH 60

Query: 52  QMSLKKLPHSKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNF 111
             + KK   S +   +L      + +    Q+     Q+LF+QEDEM SWLHYPL     
Sbjct: 61  NNNTKKPSSSSFPTKLLQPPIPPSMDNHQQQQQPSSDQNLFIQEDEMTSWLHYPLR---- 116

Query: 112 DQDFCADLLY 121
           D DFC+DLL+
Sbjct: 117 DDDFCSDLLF 126


>A2Q5K3_MEDTR (tr|A2Q5K3) Helix-loop-helix DNA-binding OS=Medicago truncatula
           GN=MtrDRAFT_AC161749g6v2 PE=4 SV=1
          Length = 484

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 55/102 (53%), Gaps = 19/102 (18%)

Query: 22  FTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLP---HSKYDDAVLPVEASNTREI 78
             RPKK I ++DEIMELLWQNGQVV Q       KK P    +       PVE  N    
Sbjct: 18  LPRPKKPIIADDEIMELLWQNGQVVTQRPNHRHAKKPPSCQETTRGGGASPVENYN---- 73

Query: 79  RSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLL 120
                     Q+LFMQE+EMASWLHY  +D+ FD+ F  D L
Sbjct: 74  ----------QYLFMQENEMASWLHY--DDSPFDRTFSTDYL 103