Jatropha Genome Database

JcCB0133611.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133611.10 - phase: 0 /pseudo/partial
         (152 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q6K698_ORYSJ (tr|Q6K698) Putative uncharacterized protein OJ1136...    99   1e-19

>Q6K698_ORYSJ (tr|Q6K698) Putative uncharacterized protein OJ1136_C12.14 OS=Oryza
           sativa subsp. japonica GN=P0643F09.34 PE=4 SV=1
          Length = 165

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 66/103 (64%)

Query: 1   PSTICFRDNPLSLGPEPPQKILVDTTTSDRFHPSSRIAWPMIXXXXXXXXXXXXXXXXXP 60
           PST+CFR+ PLSLGP PPQK LV+TTTS+R HP SRIA PMI                 P
Sbjct: 11  PSTMCFRERPLSLGPCPPQKSLVETTTSERRHPRSRIACPMISSARPFAYTSALSKKFTP 70

Query: 61  WSLQHCKRDFASLTSSWLPKLTQAPXESWLTLSPDRPRFLYCI 103
            S       FAS TSSWLP +T AP +SWLT SPD PRFLYCI
Sbjct: 71  ASRHAWSSAFASFTSSWLPNVTHAPYDSWLTRSPDLPRFLYCI 113