Jatropha Genome Database

JcCB0131911.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.10 + phase: 1 /partial
         (198 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SB20_RICCO (tr|B9SB20) Putative uncharacterized protein OS=Ric...   139   2e-31
A9PGT9_POPTR (tr|A9PGT9) Putative uncharacterized protein OS=Pop...    97   1e-18
D7TKM6_VITVI (tr|D7TKM6) Whole genome shotgun sequence of line P...    84   1e-14

>B9SB20_RICCO (tr|B9SB20) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1336590 PE=4 SV=1
          Length = 618

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 133/273 (48%), Gaps = 81/273 (29%)

Query: 1   NVLSNTIRNLDSEL-DSTKDTSVASLSKSKSNFLSPLERNWR----------GSTGVVMF 49
           NVL++TIRNLD EL +ST   S A+L KS+S+ +SP ERNWR           STGV   
Sbjct: 352 NVLAHTIRNLDGELQESTDYKSEAALLKSRSSLVSPAERNWRRRPETEVAQVKSTGVAAL 411

Query: 50  S---QPRAEGHRRRTYTGDDDTC-------LGKNSSTNSANKSWADIVEEEENQKLL--- 96
           +   QP+ EGHR R Y+  D          L + S    A      I+ E E+Q +L   
Sbjct: 412 NQIPQPKIEGHRLRCYSEYDGYAHNVLKHDLQQASWRRHAKGISDPIISETEDQIMLVDE 471

Query: 97  -------------------TGK--------------------------DLSPCFDD---- 107
                              +GK                          D++   DD    
Sbjct: 472 PREFETSICRAEQASAVNVSGKVKSTDSVAHSCLEKNSSVKSASKSWADMAEEEDDLSPY 531

Query: 108 --TWGYENEYNDENQDSNIIHNQTCPKSPVDTITEKLEACDIKDGYNTFNHSVSPRNPTA 165
             +W YE E  DEN +SNI+H   CPKSP  TI++KLEA D++DG       VSPRNPT 
Sbjct: 532 FDSWNYE-ECTDENLNSNIVHQSLCPKSPTVTISQKLEAFDLRDG-----SVVSPRNPTV 585

Query: 166 RRSLCFNGNQDYNMRKKNRLQVFRDITSTLESP 198
           RRSLCF+  +   MRK NRLQVFRDIT T +SP
Sbjct: 586 RRSLCFDAKKGPLMRKNNRLQVFRDITPTPDSP 618


>A9PGT9_POPTR (tr|A9PGT9) Putative uncharacterized protein OS=Populus trichocarpa
           PE=2 SV=1
          Length = 690

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 70  LGKNSSTNSANKSWADIVEEEENQKL-LTGKDLSPCFDDTWGYENEYNDENQDSNIIHNQ 128
           LG++    S   SWAD+VEEEE ++  L   DL   F+ +W YE   NDEN ++NI+H  
Sbjct: 540 LGQDRILKSRRMSWADMVEEEEGEEQELFTADLGQGFN-SWNYEEASNDENLNANIVHQN 598

Query: 129 TCPKSPVDTITEKLEACDIKDGYNTFNHSVSPRNPTARRSLCFNGNQDYNMRKKNRLQVF 188
           +  K     I +KLEA D++DG  T  ++VS RNPTARRSL +   +D N +++NRLQVF
Sbjct: 599 SYQKFQ-QGICQKLEAVDLQDGMGTSMNAVSSRNPTARRSLSYESAEDANTKRRNRLQVF 657

Query: 189 RDITST 194
           RDIT T
Sbjct: 658 RDITPT 663


>D7TKM6_VITVI (tr|D7TKM6) Whole genome shotgun sequence of line PN40024,
           scaffold_3.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00021697001 PE=4 SV=1
          Length = 673

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 6/132 (4%)

Query: 72  KNSSTNSANKSWADIVEEEENQKLLTGKDLSPCFDDTWGYENEYNDENQDSNIIHNQTCP 131
           ++SST+    SWAD+++    +   + +  +  +D  W +  ++NDEN +SNI H     
Sbjct: 541 QDSSTSKNKMSWADMLDYCYQKPSFSFQTPNKWYDG-WSHGEDFNDENLNSNIFHQTPPS 599

Query: 132 KSPVDTITEKLEACDIKDGYNTFNHSVSPR-NPTARRSL----CFNGNQDYNMRKKNRLQ 186
              +D ++ KLEA D+KDGYNT    VS R NPTARRSL              +++NRLQ
Sbjct: 600 VHEIDNVSYKLEAFDLKDGYNTPGSDVSSRNNPTARRSLSNETMSTSGSTIRPKRRNRLQ 659

Query: 187 VFRDITSTLESP 198
           VFRDIT   ESP
Sbjct: 660 VFRDITLHTESP 671