Jatropha Genome Database

JcCB0128961.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128961.10 + phase: 1 /pseudo/partial
         (170 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S7M4_RICCO (tr|B9S7M4) DNA binding protein, putative OS=Ricinu...    84   4e-15
B9IPB6_POPTR (tr|B9IPB6) Predicted protein OS=Populus trichocarp...    67   1e-09

>B9S7M4_RICCO (tr|B9S7M4) DNA binding protein, putative OS=Ricinus communis
           GN=RCOM_0609760 PE=4 SV=1
          Length = 459

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 93  QSNLVQQPGNNKSEVSQQDNAKTGFDGNDAGSALEESFQSVSKKQKVQENKTCKGFDPED 152
           QSN+VQ PGNNK EVS+ D+A+T    +  G ALE S Q+ S+KQK  EN+T +  DPED
Sbjct: 384 QSNIVQSPGNNKLEVSELDHARTEI--SSGGGALEGSSQNGSRKQKAPENRTGEDLDPED 441

Query: 153 NECSPASAKRPRTDE 167
           +E  PASAKRPR DE
Sbjct: 442 DESGPASAKRPRADE 456


>B9IPB6_POPTR (tr|B9IPB6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_826090 PE=4 SV=1
          Length = 436

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 85  SMNSLSLPQSNLVQQPGNNKSEVSQQDNAKTGFDGNDAGSALEESFQSVSKKQKVQENKT 144
           S N  SL QS L Q P N+K E S  D  KT FD  +A + LEES QS+++KQK  E++ 
Sbjct: 343 SQNDPSLLQSKLEQSPANDKLETSDLDCVKTRFDTCNASALLEESSQSINRKQKAPEDRN 402

Query: 145 CKGFDPEDNECSPASAKRPRTDET 168
           C+  D  + + S A  KRPRTDE 
Sbjct: 403 CQVVDKNEEKTSLAPVKRPRTDEA 426