Jatropha Genome Database

JcCB0113691.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113691.20 - phase: 0 /partial
         (50 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0PA30_MAIZE (tr|C0PA30) Putative uncharacterized protein OS=Zea...    74   7e-12

>C0PA30_MAIZE (tr|C0PA30) Putative uncharacterized protein OS=Zea mays PE=2
          SV=1
          Length = 215

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 35/40 (87%)

Query: 1  MPEHPPCLTPILKHKSSFRSFLILFRCFNAFSVKEIAGAI 40
          MPEHPPC TPILKHK+SFRS LI FRCF AFSV EIAGA+
Sbjct: 1  MPEHPPCFTPILKHKTSFRSALIWFRCFKAFSVNEIAGAM 40