Jatropha Genome Database

JcCB0109541.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109541.20 + phase: 1 /pseudo/partial
         (79 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S6S6_RICCO (tr|B9S6S6) Adipocyte plasma membrane-associated pr...    60   7e-08

>B9S6S6_RICCO (tr|B9S6S6) Adipocyte plasma membrane-associated protein,
          putative OS=Ricinus communis GN=RCOM_0873100 PE=4 SV=1
          Length = 380

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 36/44 (81%), Gaps = 1/44 (2%)

Query: 1  AILIYQIDSFDPAFIPIHELTQPP-NVLMQNSHVLERSELLDKG 43
          +++ +Q+D FDPA +PIHELT+PP NVL +N+H+L+ SE L KG
Sbjct: 37 SVIFFQLDPFDPAPMPIHELTRPPANVLTKNAHILKGSEFLGKG 80