Jatropha Genome Database

JcCB0100471.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100471.20 + phase: 0 /partial
         (98 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RXF3_RICCO (tr|B9RXF3) 50S ribosomal protein L4, putative OS=R...    78   3e-13
C6T865_SOYBN (tr|C6T865) Putative uncharacterized protein OS=Gly...    62   3e-08
D7TR72_VITVI (tr|D7TR72) Whole genome shotgun sequence of line P...    61   4e-08
C6T869_SOYBN (tr|C6T869) Putative uncharacterized protein OS=Gly...    57   5e-07

>B9RXF3_RICCO (tr|B9RXF3) 50S ribosomal protein L4, putative OS=Ricinus
          communis GN=RCOM_0903300 PE=3 SV=1
          Length = 294

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 48/75 (64%), Gaps = 14/75 (18%)

Query: 24 PCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPGSSDGAFPS 83
          P L + SF+AS               ESSSFIK  AASL  R  STSILTPGSSD AFPS
Sbjct: 17 PSLTHQSFRASH--------------ESSSFIKNGAASLACRKLSTSILTPGSSDDAFPS 62

Query: 84 DLLSTKAVLTPERNI 98
          DLLSTK +LTPER I
Sbjct: 63 DLLSTKTLLTPEREI 77


>C6T865_SOYBN (tr|C6T865) Putative uncharacterized protein OS=Glycine max PE=2
          SV=1
          Length = 312

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 18 VGRC--KSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPG 75
          +GRC   SP   + S    +D C  +S   + PA+ S  ++        R FSTSILTPG
Sbjct: 20 LGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRS-LVRSMV-----RQFSTSILTPG 73

Query: 76 SSDGAFPSDLLSTKAVLTPERNI 98
          + D AFPSDLLS K + T ER I
Sbjct: 74 ADDSAFPSDLLSKKTLATSERTI 96


>D7TR72_VITVI (tr|D7TR72) Whole genome shotgun sequence of line PN40024,
          scaffold_235.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00004810001 PE=4 SV=1
          Length = 315

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 19 GRCKSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPGSSD 78
          G C SP +    F+ S   CG VS   LF  +SS    G +        +T+ILTP SS 
Sbjct: 20 GHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSC-KTGSSFLSSRSLSTTTILTPESSG 78

Query: 79 GAFPSDLLSTKAVLTPER 96
           AFP +LLSTK VLTPER
Sbjct: 79 VAFPPELLSTKTVLTPER 96


>C6T869_SOYBN (tr|C6T869) Putative uncharacterized protein OS=Glycine max PE=2
          SV=1
          Length = 224

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 18 VGRCKSPCLAYHSFQASQDFCGHVSWGCLFPAESSSFIKGEAASLPYRSFSTSILTPGSS 77
          +GRC      + S    +D CG +S   +F A+ S  + G       R FSTSILTPG  
Sbjct: 20 LGRCYFDSPGFASIYKPRDVCGGLSGERMFSADRS--LVGSMV----RQFSTSILTPGDD 73

Query: 78 DGAFPSDLLSTKAVLTPERNI 98
          D AFPSDLLS K + T ER I
Sbjct: 74 DSAFPSDLLSKKILATSERTI 94