Jatropha Genome Database

JcCB0086351.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086351.10 - phase: 2 /pseudo/partial
         (72 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5ADM6_VITVI (tr|A5ADM6) Putative uncharacterized protein OS=Vit...    83   1e-14
D7T1B0_VITVI (tr|D7T1B0) Whole genome shotgun sequence of line P...    82   1e-14
Q9C587_ARATH (tr|Q9C587) At5g22010 OS=Arabidopsis thaliana GN=At...    82   3e-14
D7M0S7_ARALY (tr|D7M0S7) AAA-type ATPase family protein OS=Arabi...    81   4e-14
B8BL55_ORYSI (tr|B8BL55) Putative uncharacterized protein OS=Ory...    79   2e-13
Q84N08_ORYSJ (tr|Q84N08) Replication factor C 110 kDa subunit OS...    79   2e-13
Q2R2B4_ORYSJ (tr|Q2R2B4) BRCA1 C Terminus domain containing prot...    79   2e-13
C5X681_SORBI (tr|C5X681) Putative uncharacterized protein Sb02g0...    78   4e-13
C5Y4V8_SORBI (tr|C5Y4V8) Putative uncharacterized protein Sb05g0...    77   6e-13
Q8L6A5_9POAL (tr|Q8L6A5) Replication factor C large subunit (Fra...    75   2e-12
B9GEP9_POPTR (tr|B9GEP9) Predicted protein OS=Populus trichocarp...    75   2e-12
A9TGH4_PHYPA (tr|A9TGH4) Predicted protein (Fragment) OS=Physcom...    64   4e-09
A9NXU4_PICSI (tr|A9NXU4) Putative uncharacterized protein OS=Pic...    63   9e-09

>A5ADM6_VITVI (tr|A5ADM6) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_029381 PE=4 SV=1
          Length = 783

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/42 (92%), Positives = 39/42 (92%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLSMSVIKYDDVRQRLLSSAKDEDISPF AVDK
Sbjct: 604 MALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDK 645


>D7T1B0_VITVI (tr|D7T1B0) Whole genome shotgun sequence of line PN40024,
           scaffold_9.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00037357001 PE=4 SV=1
          Length = 941

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/42 (92%), Positives = 39/42 (92%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLSMSVIKYDDVRQRLLSSAKDEDISPF AVDK
Sbjct: 549 MALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDK 590


>Q9C587_ARATH (tr|Q9C587) At5g22010 OS=Arabidopsis thaliana GN=At5g22010 PE=1
           SV=1
          Length = 956

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/42 (88%), Positives = 40/42 (95%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           + +N LQYMSLSMSVIKYDD+RQRLLSSAKDEDISPFTAVDK
Sbjct: 567 LAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDK 608


>D7M0S7_ARALY (tr|D7M0S7) AAA-type ATPase family protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_489049 PE=4 SV=1
          Length = 960

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/42 (88%), Positives = 39/42 (92%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           + LN LQYMSLSMS IKYDD+RQRLLSSAKDEDISPFTAVDK
Sbjct: 571 LALNQLQYMSLSMSAIKYDDIRQRLLSSAKDEDISPFTAVDK 612


>B8BL55_ORYSI (tr|B8BL55) Putative uncharacterized protein OS=Oryza sativa subsp.
           indica GN=OsI_36544 PE=4 SV=1
          Length = 1014

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+RQRL SS KDEDISPFTAVDK
Sbjct: 626 MALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDK 667


>Q84N08_ORYSJ (tr|Q84N08) Replication factor C 110 kDa subunit OS=Oryza sativa
           subsp. japonica GN=OsRFC1 PE=2 SV=1
          Length = 1021

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+RQRL SS KDEDISPFTAVDK
Sbjct: 633 MALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDK 674


>Q2R2B4_ORYSJ (tr|Q2R2B4) BRCA1 C Terminus domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=Os11g0572100 PE=2
           SV=2
          Length = 1021

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+RQRL SS KDEDISPFTAVDK
Sbjct: 633 MALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDK 674


>C5X681_SORBI (tr|C5X681) Putative uncharacterized protein Sb02g030910 OS=Sorghum
           bicolor GN=Sb02g030910 PE=4 SV=1
          Length = 1025

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+R+RL SS+KDEDISPFTAVDK
Sbjct: 636 MALNHLQYMSLSQSVVKYDDIRERLNSSSKDEDISPFTAVDK 677


>C5Y4V8_SORBI (tr|C5Y4V8) Putative uncharacterized protein Sb05g022200 OS=Sorghum
           bicolor GN=Sb05g022200 PE=4 SV=1
          Length = 946

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+R+RL SS+KDEDISPFTAVDK
Sbjct: 558 MALNHLQYMSLSQSVVKYDDIRERLNSSSKDEDISPFTAVDK 599


>Q8L6A5_9POAL (tr|Q8L6A5) Replication factor C large subunit (Fragment)
           OS=Triticum sp. GN=rfc-1 PE=2 SV=1
          Length = 543

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 38/42 (90%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LNHLQYMSLS SV+KYDD+R RL SS+KDEDISPFTAVDK
Sbjct: 155 MALNHLQYMSLSQSVVKYDDIRLRLNSSSKDEDISPFTAVDK 196


>B9GEP9_POPTR (tr|B9GEP9) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_548718 PE=4 SV=1
          Length = 429

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/41 (87%), Positives = 36/41 (87%)

Query: 17 MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVD 57
          M LN LQYMSLSMSVI YDDVRQRL  SAKDEDISPFTAVD
Sbjct: 18 MALNQLQYMSLSMSVINYDDVRQRLQGSAKDEDISPFTAVD 58


>A9TGH4_PHYPA (tr|A9TGH4) Predicted protein (Fragment) OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_145270 PE=4 SV=1
          Length = 850

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSL    +KY DVR RL++SAKDED++PF+AVDK
Sbjct: 510 MALNQLQYMSLRSRSLKYSDVRTRLMASAKDEDVTPFSAVDK 551


>A9NXU4_PICSI (tr|A9NXU4) Putative uncharacterized protein OS=Picea sitchensis
           PE=2 SV=1
          Length = 550

 Score = 63.2 bits (152), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 17  MRLNHLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFTAVDK 58
           M LN LQYMSLS S++KY D++ RL  S KDEDI+PFTAVDK
Sbjct: 235 MALNQLQYMSLSSSILKYADIKARLQGSKKDEDITPFTAVDK 276