Jatropha Genome Database

JcCB0073371.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0073371.20 + phase: 0 /partial
         (67 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3U2C2_CUCSA (tr|B3U2C2) Growth regulating factor (Fragment) OS=...    66   1e-09

>B3U2C2_CUCSA (tr|B3U2C2) Growth regulating factor (Fragment) OS=Cucumis
          sativus GN=GRF PE=4 SV=1
          Length = 54

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 34/42 (80%)

Query: 1  FLERWRPLFICRSQYFWSATASLEHRHFFPSVLRHRPGSGSV 42
          FLER RP  + RSQYFW AT SLE RHF PSVLRHRPGSGS+
Sbjct: 1  FLERLRPRCMWRSQYFWPATTSLEQRHFLPSVLRHRPGSGSM 42