Jatropha Genome Database

JcCB0070971.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070971.20 - phase: 2 /partial
         (83 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9T2A3_RICCO (tr|B9T2A3) Auxin-induced protein 5NG4, putative OS...    82   1e-14

>B9T2A3_RICCO (tr|B9T2A3) Auxin-induced protein 5NG4, putative OS=Ricinus
           communis GN=RCOM_0463580 PE=4 SV=1
          Length = 368

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 50/80 (62%)

Query: 4   TLLVAFLAYFFFGEELRMXXXXXXXXXXXXXXXXXXXKEGDGDQIKSKDESFPAYDEEKD 63
           T+LV  LAYF FGEELR                    KEGD D+ KS ++SFP +D+EKD
Sbjct: 289 TILVTILAYFLFGEELRTGSLVGGGIVIIGLYLLLLGKEGDQDRTKSNEQSFPIHDQEKD 348

Query: 64  LQTQMETSARREAAQQDFEK 83
           L+ QMETSA+REAA QD EK
Sbjct: 349 LKIQMETSAQREAAHQDPEK 368