Jatropha Genome Database

JcCB0064981.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064981.20 + phase: 0 /partial/short
         (43 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9H6T8_POPTR (tr|B9H6T8) Predicted protein OS=Populus trichocarp...    65   2e-09
B9GN86_POPTR (tr|B9GN86) Predicted protein OS=Populus trichocarp...    59   1e-07

>B9H6T8_POPTR (tr|B9H6T8) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_558987 PE=4 SV=1
          Length = 288

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)

Query: 1   GTLRDLSKKTQEHSLTPVEQGEAEANDSDSGNAIHTHNNLVTY 43
           GTLRDL+KKT +HS T +EQGEAEANDSDSG AI T NNLVTY
Sbjct: 235 GTLRDLTKKT-DHSATLIEQGEAEANDSDSGTAIDTDNNLVTY 276


>B9GN86_POPTR (tr|B9GN86) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_551709 PE=4 SV=1
          Length = 290

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 1   GTLRDLSKKTQEHSLTPVEQGEAEANDSDSGNAIHTHNNLVTY 43
           GTLRD SKK  EHS+ P++ GE EAN+SDS  AI+THNN VTY
Sbjct: 236 GTLRDHSKKALEHSVAPIDLGETEANESDSVPAINTHNNPVTY 278