Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.20 + phase: 0 
         (185 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S2W2_RICCO (tr|B9S2W2) Putative uncharacterized protein OS=Ric...   102   2e-20
B9H7I2_POPTR (tr|B9H7I2) Predicted protein OS=Populus trichocarp...    99   1e-19

>B9S2W2_RICCO (tr|B9S2W2) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0562950 PE=4 SV=1
          Length = 196

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 64/100 (64%), Gaps = 7/100 (7%)

Query: 93  WRFEQPTRVRPECVSPGCFP-SPLLKRKDSKRRT----VQLP--ESETDYTSDLETLARW 145
           WRF+QPTRV PECVSPGCFP SPLLKRK SKRRT    + +P  ESE DY SDLETLARW
Sbjct: 97  WRFDQPTRVGPECVSPGCFPSSPLLKRKGSKRRTSHVHIDIPGSESEGDYVSDLETLARW 156

Query: 146 SLSSRKXXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
           SLSSRK                        +AEWAGFGLF
Sbjct: 157 SLSSRKSFSPFNDSSVSSYSSSQSSPRPVSDAEWAGFGLF 196


>B9H7I2_POPTR (tr|B9H7I2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_651446 PE=4 SV=1
          Length = 193

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 64/96 (66%), Gaps = 3/96 (3%)

Query: 93  WRFEQPTRVRPECVSPGCFPSPLLKRKDSKRRT---VQLPESETDYTSDLETLARWSLSS 149
           WRFEQPT VRPECVSPGCFPSPLL+RKDSKRRT   +  P SE DYTSDL+TL+RWS+SS
Sbjct: 98  WRFEQPTHVRPECVSPGCFPSPLLRRKDSKRRTSAGIAKPASEPDYTSDLDTLSRWSISS 157

Query: 150 RKXXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
           RK                        +A+WAGFGLF
Sbjct: 158 RKSFSSFRDSPASSFSSYQSSPRPVSDAQWAGFGLF 193