Jatropha Genome Database

JcCB0057531.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057531.20 - phase: 1 /pseudo/partial
         (138 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S705_RICCO (tr|B9S705) Amino acid transporter, putative OS=Ric...    56   1e-06

>B9S705_RICCO (tr|B9S705) Amino acid transporter, putative OS=Ricinus communis
           GN=RCOM_1330250 PE=4 SV=1
          Length = 461

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 29/41 (70%)

Query: 68  LCNYTSDWSLPVYFPLNMYKVQTNIKRGSCRWMCFQAMSLV 108
           L    S W L VYFPL+MY  Q NIKRGS RW+ FQA+SLV
Sbjct: 391 LLGAVSFWPLTVYFPLSMYMKQANIKRGSSRWVSFQALSLV 431