Jatropha Genome Database

JcCB0055221.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.30 - phase: 0 
         (91 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9H4V2_POPTR (tr|B9H4V2) Predicted protein OS=Populus trichocarp...    57   5e-07
B9RGV6_RICCO (tr|B9RGV6) Putative uncharacterized protein OS=Ric...    56   1e-06

>B9H4V2_POPTR (tr|B9H4V2) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_652042 PE=4 SV=1
          Length = 88

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 3  RFILVMLLLICIGAEQVQGQKALAKCLSTCGESILKCALGCAPTGMPQLA-KCILKCGVA 61
            +L +LLLIC+GA QV+ Q++L +CL+ CG+ I+KCA  CA  G  + A  CI  C V 
Sbjct: 6  HIVLALLLLICVGAAQVKSQESLPQCLAACGQDIMKCAETCASKGPLEDAISCIETCSVD 65

Query: 62 NFSCMEKC 69
          NF+CM  C
Sbjct: 66 NFTCMYDC 73


>B9RGV6_RICCO (tr|B9RGV6) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1444610 PE=4 SV=1
          Length = 96

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 6  LVMLLLICIGAEQVQGQ-KALAKCLSTCGESILKCALGCAPT--GMPQLAKCILKCGVAN 62
          +++LLL+   A   Q Q   + +CL+ CG+ I+ C + C  T  G+P+LA+CI  CG  N
Sbjct: 14 MLVLLLMWAWAGTAQAQVNDMGQCLTGCGQDIVTCTVRCVETSKGLPELAQCIEGCGATN 73

Query: 63 FSCMEKCVG 71
          FSCM KC G
Sbjct: 74 FSCMGKCTG 82