Jatropha Genome Database

JcCB0046591.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0046591.20 - phase: 1 /TE/partial
         (219 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demiss...    55   4e-06

>Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demissum
           GN=SDM1_19t00015 PE=4 SV=2
          Length = 868

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%)

Query: 89  ETEVDVWGI*VP*HTCF*HLGSVIQTMTGCQ*DITHEIKTRGMKW*SVTGVLCNCKISAK 148
           + EV +    +P    F +LG+VIQ       D+TH +    MKW   +GVLC+ KIS K
Sbjct: 489 DVEVRLAAQVIPKKESFRYLGAVIQGSGDIDDDVTHRVGAAWMKWRLASGVLCDKKISPK 548

Query: 149 SSGKFYRIILSHLTNY 164
             GKFYR+++     Y
Sbjct: 549 LKGKFYRVVVRPALLY 564