Jatropha Genome Database

JcCB0045441.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045441.20 - phase: 2 /pseudo/partial
         (101 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9FKI8_ARATH (tr|Q9FKI8) Transporter-like protein OS=Arabidopsis...    59   2e-07

>Q9FKI8_ARATH (tr|Q9FKI8) Transporter-like protein OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 515

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 13  QHPLWPXHKFLDGYRYKVFSWEFQRFTWTYKDASCIRLFSQFSNFMFIEQAYACEIFREE 72
           Q   W   KFLDG  +KV SWEFQ F W  +D     L S +    F  QAYA EIFR+E
Sbjct: 122 QRSFWLELKFLDGNWHKVSSWEFQLFAWNNEDCQLHLLLSYYQCVNF--QAYASEIFRDE 179

Query: 73  YSALGLSTVST 83
           Y A  +S VST
Sbjct: 180 YQATAMSAVST 190