Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.20 + phase: 0 /partial
         (113 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HH34_POPTR (tr|B9HH34) Predicted protein OS=Populus trichocarp...    94   4e-18
B9SG10_RICCO (tr|B9SG10) Chromatin binding protein, putative OS=...    94   5e-18
D7TTE4_VITVI (tr|D7TTE4) Whole genome shotgun sequence of line P...    82   3e-14
O23159_ARATH (tr|O23159) Putative uncharacterized protein AT4g37...    74   7e-12

>B9HH34_POPTR (tr|B9HH34) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_870174 PE=4 SV=1
          Length = 332

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 55/90 (61%), Gaps = 24/90 (26%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           E SSGD  PSNS +FSEGERVLAYHGPRIYEAKA  S+ ++L +                
Sbjct: 14  EASSGDKTPSNSSLFSEGERVLAYHGPRIYEAKASLSIRSFLFYF--------------- 58

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                    F  VQKAELRKKEWRYFVHYL
Sbjct: 59  ---------FYFVQKAELRKKEWRYFVHYL 79


>B9SG10_RICCO (tr|B9SG10) Chromatin binding protein, putative OS=Ricinus communis
           GN=RCOM_1153870 PE=4 SV=1
          Length = 318

 Score = 94.0 bits (232), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 51/90 (56%), Gaps = 39/90 (43%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           ETSSGDAPPSNSG+FSEGERVLAYHGPRIYEAK                           
Sbjct: 14  ETSSGDAPPSNSGIFSEGERVLAYHGPRIYEAK--------------------------- 46

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                       VQKAELRKKEWRYFVHYL
Sbjct: 47  ------------VQKAELRKKEWRYFVHYL 64


>D7TTE4_VITVI (tr|D7TTE4) Whole genome shotgun sequence of line PN40024,
           scaffold_129.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00000215001 PE=4 SV=1
          Length = 321

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 47/90 (52%), Gaps = 39/90 (43%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           +TS+GD P SNSG FSEGE+VLAYHGPRIYEAK                           
Sbjct: 17  DTSTGDLPASNSGTFSEGEKVLAYHGPRIYEAK--------------------------- 49

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                       VQKAE RKKEWRYFVHYL
Sbjct: 50  ------------VQKAEFRKKEWRYFVHYL 67


>O23159_ARATH (tr|O23159) Putative uncharacterized protein AT4g37280
           OS=Arabidopsis thaliana GN=C7A10.80 PE=2 SV=2
          Length = 327

 Score = 73.6 bits (179), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 49/91 (53%), Gaps = 33/91 (36%)

Query: 15  ETSSGDAPPSNSG-VFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTC 73
           +T+SG A PSN G +FSEGERVLAYHGPR+Y AK +                        
Sbjct: 14  DTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKII------------------------ 49

Query: 74  SLPTASINLKFTVVQKAELRKKEWRYFVHYL 104
            +P          VQK ELRKKEW+YFVHYL
Sbjct: 50  DIPLQ--------VQKVELRKKEWKYFVHYL 72