Jatropha Genome Database

JcCB0033901.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033901.10 - phase: 0 /pseudo/partial
         (70 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D7U8K0_VITVI (tr|D7U8K0) Whole genome shotgun sequence of line P...    75   2e-12
B9SKH9_RICCO (tr|B9SKH9) Nucleolar GTP-binding protein, putative...    72   2e-11
A5APJ2_VITVI (tr|A5APJ2) Putative uncharacterized protein OS=Vit...    69   2e-10
D7KWN1_ARALY (tr|D7KWN1) PDE318 (Fragment) OS=Arabidopsis lyrata...    53   1e-05

>D7U8K0_VITVI (tr|D7U8K0) Whole genome shotgun sequence of line PN40024,
           scaffold_32.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00022468001 PE=4 SV=1
          Length = 456

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 43/67 (64%), Gaps = 14/67 (20%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQN---------ETM-----LPMVMPSVDIFYSALRKAK 46
           +QT  Y +VN SYVP PQ K Q N         ET+     LPMVMPSVDI YSALRKAK
Sbjct: 47  IQTTAYRIVNGSYVPVPQNKNQSNKEDIASTTLETVGAFQKLPMVMPSVDILYSALRKAK 106

Query: 47  RVPPTKG 53
           RV PTKG
Sbjct: 107 RVSPTKG 113


>B9SKH9_RICCO (tr|B9SKH9) Nucleolar GTP-binding protein, putative OS=Ricinus
           communis GN=RCOM_0658890 PE=4 SV=1
          Length = 443

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 43/67 (64%), Gaps = 15/67 (22%)

Query: 2   QTVTYEVVNASYVPTPQAKQQQNETM---------------LPMVMPSVDIFYSALRKAK 46
           QT+TYE+VNASYVP  Q K  ++ T                LPMVMPSVDI YSALRKAK
Sbjct: 49  QTITYEIVNASYVPIHQTKPTRSYTTDKSPGNLQNLGAFQKLPMVMPSVDILYSALRKAK 108

Query: 47  RVPPTKG 53
           RV PTKG
Sbjct: 109 RVSPTKG 115


>A5APJ2_VITVI (tr|A5APJ2) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_043181 PE=4 SV=1
          Length = 354

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 42/67 (62%), Gaps = 14/67 (20%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQN---------ETM-----LPMVMPSVDIFYSALRKAK 46
           +QT  Y +VN SYVP PQ K Q           ET+     LPMVMPSVDI YSALRKAK
Sbjct: 58  IQTTAYRIVNGSYVPVPQNKNQSXKEDIASTTLETVGAFQKLPMVMPSVDILYSALRKAK 117

Query: 47  RVPPTKG 53
           RV PTKG
Sbjct: 118 RVSPTKG 124


>D7KWN1_ARALY (tr|D7KWN1) PDE318 (Fragment) OS=Arabidopsis lyrata subsp. lyrata
           GN=ARALYDRAFT_477163 PE=4 SV=1
          Length = 449

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 19/72 (26%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQNET-------------------MLPMVMPSVDIFYSA 41
           +QT    +V++SY+PT    Q+Q E                     LPMVMPS+D++ SA
Sbjct: 49  LQTAVSPIVSSSYLPTSYITQKQIEIPTSPEKQSPPVQEGLGAFQKLPMVMPSIDLYCSA 108

Query: 42  LRKAKRVPPTKG 53
           LRK+KRV PTKG
Sbjct: 109 LRKSKRVQPTKG 120