Jatropha Genome Database

JcCB0031871.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.20 + phase: 0 /pseudo
         (206 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9IKY1_POPTR (tr|B9IKY1) Predicted protein OS=Populus trichocarp...    79   2e-13
B9RP34_RICCO (tr|B9RP34) Putative uncharacterized protein OS=Ric...    65   5e-09
A2Q4W7_MEDTR (tr|A2Q4W7) Putative uncharacterized protein OS=Med...    62   3e-08
C6T352_SOYBN (tr|C6T352) Putative uncharacterized protein OS=Gly...    61   6e-08

>B9IKY1_POPTR (tr|B9IKY1) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_825742 PE=4 SV=1
          Length = 185

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 1  MADLSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVKS 60
          M + SI +R Y Y+H+ KWPSEAID+HH++VRKS  K FFV+ SA ++L NA  LFLVK+
Sbjct: 1  MTEFSIANRGYGYLHERKWPSEAIDMHHVMVRKSNGKGFFVFFSALIVLANASYLFLVKN 60


>B9RP34_RICCO (tr|B9RP34) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0923880 PE=4 SV=1
          Length = 180

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 4  LSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVK 59
          +SI +RRYTYIHDCK PS+AI+ HHI+VRKS+     V L  FVLL N   LFL K
Sbjct: 1  MSIANRRYTYIHDCKLPSKAINTHHIIVRKSRR---IVCLLGFVLLTNTSFLFLFK 53


>A2Q4W7_MEDTR (tr|A2Q4W7) Putative uncharacterized protein OS=Medicago
          truncatula GN=MtrDRAFT_AC157893g40v2 PE=4 SV=1
          Length = 178

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 6  ITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVKS----- 60
          + D RY Y+HD K+PSE +D+HHIV+R +  K FFVY SA ++L   + L+L++      
Sbjct: 1  MVDTRYNYVHDQKYPSEDVDIHHIVLRSNGGKYFFVYASALIVLACGIYLYLLEEKSISL 60

Query: 61 --FVTLTDIMMIK 71
            +  L DI ++K
Sbjct: 61 VYYSLLFDIFLVK 73


>C6T352_SOYBN (tr|C6T352) Putative uncharacterized protein OS=Glycine max PE=2
          SV=1
          Length = 182

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 8/78 (10%)

Query: 1  MADLSITDRRYTYIHDCKWPSEAIDVHHIVVRKSKTKSFFVYLSAFVLLPNALCLFLVK- 59
          M   SI++ RYTY+HD K+PS+ +D+HHIV R+S  K + VY +A ++L  AL L+++K 
Sbjct: 1  MVIFSISNARYTYVHDQKYPSKDVDIHHIVSRRSNAK-YLVYATALLVLACALYLYVLKG 59

Query: 60 ---SFV---TLTDIMMIK 71
             SFV    L DI ++K
Sbjct: 60 KSISFVYYSLLFDIFLVK 77