Jatropha Genome Database

JcCB0011381.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011381.10 + phase: 2 /pseudo/partial
         (137 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SB08_RICCO (tr|B9SB08) ATP binding protein, putative OS=Ricinu...    69   1e-10
B9GGK0_POPTR (tr|B9GGK0) Predicted protein OS=Populus trichocarp...    55   2e-06

>B9SB08_RICCO (tr|B9SB08) ATP binding protein, putative OS=Ricinus communis
            GN=RCOM_1335970 PE=4 SV=1
          Length = 1548

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 3/64 (4%)

Query: 56   LKYKLSGFLRWDTTAKLSLPVQIAAITS---LLPFDFEDIIKSNLNLPEYASQSVFTDLI 112
            LK KL GFL  +TT++ SLPVQIA +TS   LL  DF+D+++S+L LP+ ASQSV+ DL+
Sbjct: 1462 LKSKLFGFLWQNTTSRSSLPVQIATVTSILGLLRLDFKDVVQSDLKLPKVASQSVYIDLL 1521

Query: 113  RNXF 116
            R  F
Sbjct: 1522 RKWF 1525


>B9GGK0_POPTR (tr|B9GGK0) Predicted protein OS=Populus trichocarpa
            GN=POPTRDRAFT_753718 PE=4 SV=1
          Length = 1716

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 56   LKYKLSGFLRWDTTAKLSLPVQI---AAITSLLPFDFEDIIKSNLNLPEYASQSVFTDLI 112
            L+YKLSGFL  D T +++LPVQI    ++ +LL  +FE +I+SN NLP  A QSV  D I
Sbjct: 1632 LRYKLSGFLSCDATIQMALPVQIALATSLLALLSLEFEKVIQSNCNLPAIACQSVSIDHI 1691

Query: 113  RNXF 116
            R+ F
Sbjct: 1692 RSWF 1695