Jatropha Genome Database

JcCB0009541.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.20 - phase: 0 
         (166 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RA23_RICCO (tr|B9RA23) Putative uncharacterized protein OS=Ric...   108   2e-22

>B9RA23_RICCO (tr|B9RA23) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1502870 PE=4 SV=1
          Length = 161

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 80/137 (58%), Gaps = 45/137 (32%)

Query: 1   MTPNSNFHEMEVEDRNAQADAA--TVENNEILETGECNTRNVVGILTRLRSGTISPVKYF 58
           +TPN N HE+E ED+NA A+A    +ENNE   TGE N RN++                 
Sbjct: 58  LTPN-NTHEVEAEDQNALAEAGQLAIENNE---TGEWN-RNLL----------------- 95

Query: 59  PRVSATSCQXXXXXXXXXXXXETLLRRHSLPVRPCSSYSFFVMANWGSVKNSSFSEVSKT 118
                                ET+LRRHSLP RPCSSY+ FVM+NW SVKNSSF E SK+
Sbjct: 96  ---------------------ETVLRRHSLPARPCSSYALFVMSNWVSVKNSSFGEASKS 134

Query: 119 LGQMWGQLSGQEKKVFM 135
           LG++WGQLS QEKKVF+
Sbjct: 135 LGRIWGQLSLQEKKVFI 151