Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.20 + phase: 0 /partial
         (245 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SKE7_RICCO (tr|B9SKE7) Transcription factor, putative OS=Ricin...   135   5e-30
B9MV52_POPTR (tr|B9MV52) Predicted protein OS=Populus trichocarp...   124   1e-26
B9GP79_POPTR (tr|B9GP79) Predicted protein OS=Populus trichocarp...   117   2e-24

>B9SKE7_RICCO (tr|B9SKE7) Transcription factor, putative OS=Ricinus communis
           GN=RCOM_0658460 PE=4 SV=1
          Length = 490

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 36  QGFYMENHRNGNTIMNTRSIHKLYRNGI-XXXXXXXXXXXXXXXXXXXXFRIRIPTEVSI 94
           QGFYMEN RNG +++NTRSIHKLYRNGI                     FRIRIPT VSI
Sbjct: 299 QGFYMENQRNGGSVLNTRSIHKLYRNGIGVNTGSNMNSGASASASAASGFRIRIPTGVSI 358

Query: 95  AQPGPKFYAKVDQKYTGXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXDEIGKKRERE 154
           AQP PKFY   DQKY G                                 DEIGKKRER+
Sbjct: 359 AQPAPKFY---DQKY-GVNPNSIPKPNFGGAGSGSVSGSGLASGRVLRGSDEIGKKRERD 414

Query: 155 PMEEMVAAVKVLGDGFVRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           PMEEMVAA+KVLGDGFVRMEQMK                     IL SQQ IV
Sbjct: 415 PMEEMVAAIKVLGDGFVRMEQMKMEMAREIETMRMDMEMKRTEMILHSQQRIV 467


>B9MV52_POPTR (tr|B9MV52) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_591748 PE=4 SV=1
          Length = 343

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 41  ENHRNGNTIMNTRSIHKLYRNGI----XXXXXXXXXXXXXXXXXXXXFRIRIPTEVSIAQ 96
           EN+R    +MNTRSI KLYRNG+                        FRIRIPT VSIAQ
Sbjct: 153 ENYRTAGNVMNTRSIQKLYRNGMGNPGTGSGNNGLSGGNSSSGNAGGFRIRIPTGVSIAQ 212

Query: 97  PGPKFYAKVDQKYTGXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXDEIGKKREREPM 156
           PGPKFYAK +QKY G                                 +E+GKKREREPM
Sbjct: 213 PGPKFYAKPEQKYGGGPSMGVNASPNPNL--KPNYGGMGSSSRVMRGGEEMGKKREREPM 270

Query: 157 EEMVAAVKVLGDGFVRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           EE+VAA+KVLGDGFVRMEQMK                     ILESQQ IV
Sbjct: 271 EELVAAIKVLGDGFVRMEQMKMEMAREMETMRMEMEMKRTEMILESQQRIV 321


>B9GP79_POPTR (tr|B9GP79) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_551971 PE=4 SV=1
          Length = 365

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 87/178 (48%), Gaps = 7/178 (3%)

Query: 36  QGFYMENHRNGNTIMNTRSIHKLYRNGIXXXXXXXXXXXXXXXXXXXX------FRIRIP 89
           +G Y+EN RN    MNTRSI KLY NGI                          FRIRIP
Sbjct: 167 RGSYLENCRNAKNFMNTRSIQKLYGNGIGNPGNGGDNNGLSGGNSSLGSGNAGGFRIRIP 226

Query: 90  TEVSIAQPGPKFYAKVDQKYTGXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXDEIGK 149
           T VS+AQPGPKFYAK +QK+ G             +                   +E+G+
Sbjct: 227 TGVSVAQPGPKFYAKTEQKH-GGSPNMGVNASPDPYPKPKYGGGVGTSSRVMRGSEEMGR 285

Query: 150 KREREPMEEMVAAVKVLGDGFVRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           KREREPMEE+VAAVKVLGDGFVRMEQMK                     IL+SQQ IV
Sbjct: 286 KREREPMEELVAAVKVLGDGFVRMEQMKMEMAREMETMRMEMEMKRTEMILDSQQRIV 343