Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RH04_RICCO (tr|B9RH04) Putative uncharacterized protein OS=Ric...   129   1e-28
B9N0V4_POPTR (tr|B9N0V4) Predicted protein OS=Populus trichocarp...   114   3e-24
B9GFH6_POPTR (tr|B9GFH6) Predicted protein OS=Populus trichocarp...    83   9e-15
Q2HUJ5_MEDTR (tr|Q2HUJ5) Transcriptional factor B3 OS=Medicago t...    62   2e-08

>B9RH04_RICCO (tr|B9RH04) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1445690 PE=4 SV=1
          Length = 321

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 1   MMKEQGAGHEKPEARAWMAGGDVVTVEGDKAXXXXXXXXXXXXXXXXXRIGLTR----NE 56
           M  E+GA HEKPEA  W+  GD VT EGD                    + +TR    ++
Sbjct: 1   MKTERGAVHEKPEACTWITSGDSVTEEGDNKANNTFEEASSDQGSGRT-VMMTRSSGDDD 59

Query: 57  VVAAVLGFGVIRKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
            V AVLGF VIRKKRMPRQRRPSS+IN+LFSF                            
Sbjct: 60  NVVAVLGFSVIRKKRMPRQRRPSSSINNLFSF----PIATNASSSSSSTTTTTTSHVPDL 115

Query: 117 XXXXARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
               ARVIDQRRLSFLFQKELKNSDVSSLKRM+LPK
Sbjct: 116 PSFPARVIDQRRLSFLFQKELKNSDVSSLKRMVLPK 151


>B9N0V4_POPTR (tr|B9N0V4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_597091 PE=4 SV=1
          Length = 269

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 78/152 (51%), Gaps = 11/152 (7%)

Query: 1   MMKEQGAGHEKPEARAWMAGGDVVTVEGDKAXXXXXXXXXXXXXXXXXRIGLTRNEVVAA 60
           MM  QG  HEKPEA AWMAGG+ VT EGD                     G  R+ +  +
Sbjct: 1   MMMHQGMVHEKPEACAWMAGGEGVTEEGDNKQTPNIEGGSDLVID-----GSNRDHLAGS 55

Query: 61  VLGFGVIRKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ++G  + RKKRMPRQRR SS INHL SF                                
Sbjct: 56  MVGLEIKRKKRMPRQRRSSSTINHLLSF------SANVSCSTTTTLDVPTFSLQDPSSLP 109

Query: 121 ARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
           AR ID RRL FLFQKELKNSDVSSL+R+ILPK
Sbjct: 110 ARAIDPRRLRFLFQKELKNSDVSSLRRIILPK 141


>B9GFH6_POPTR (tr|B9GFH6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_1069320 PE=4 SV=1
          Length = 259

 Score = 83.2 bits (204), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 61  VLGFGVIRKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ++GF + RKKRMPRQRR SS INHL SF                                
Sbjct: 1   MVGFEIKRKKRMPRQRRSSSTINHLLSFAANASCSATTHLHVPAFSLPLQDPSSLP---- 56

Query: 121 ARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
           ARVID RRL FLFQKEL+NSDVSSL+RMILPK
Sbjct: 57  ARVIDPRRLRFLFQKELQNSDVSSLRRMILPK 88


>Q2HUJ5_MEDTR (tr|Q2HUJ5) Transcriptional factor B3 OS=Medicago truncatula
           GN=MtrDRAFT_AC149131g24v2 PE=4 SV=1
          Length = 314

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 70/162 (43%), Gaps = 26/162 (16%)

Query: 1   MMKEQGAGH-----EKPEARAWMAGGD----VVTVEGDKAXXXXXXXXXXXXXXXXXRIG 51
           MM ++G G      +K EA  +MAG +     V V+GD                   RI 
Sbjct: 1   MMMDEGEGKKKVVVQKTEACGFMAGVEDELGFVNVKGDN------------NNGSGQRIH 48

Query: 52  LTRNEVVAAVLGFGVI-RKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXX 110
                V AA   FG + RKKRM RQRR SS+   +                         
Sbjct: 49  HDHGFVAAA---FGTVHRKKRMARQRRSSSSTITI-HLKNLPSSTTTTTTTTTSHVPISP 104

Query: 111 XXXXXXXXXXARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
                     AR ID RRL FLFQKELKNSDVSSL+RM+LPK
Sbjct: 105 IPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPK 146