Jatropha Genome Database

JcCB0006821.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.10 - phase: 0 /pseudo
         (170 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q4R7V0_MACFA (tr|Q4R7V0) Testis cDNA clone: QtsA-14323, similar ...    91   4e-17

>Q4R7V0_MACFA (tr|Q4R7V0) Testis cDNA clone: QtsA-14323, similar to human histone
           deacetylase 1 (HDAC1), OS=Macaca fascicularis PE=2 SV=1
          Length = 163

 Score = 90.9 bits (224), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 4/126 (3%)

Query: 1   MMQTTSPIQSNIGVTTIELDGRPNRTTSRRLTKSKKPIKNRTILPNIKPLKM-PIMRRVG 59
           M+Q  SPI S++ +  I+     +RTTSR+LT+ K+ +K  T+L  ++ L +  ++R V 
Sbjct: 1   MVQALSPIHSDVRLLLIKFHSTCHRTTSRQLTELKQVVKYWTVLTKVESLHLLAVLRHV- 59

Query: 60  QRLWRHRRKELDIVVGMELPDIGGTGGERPVDLHPTMERVVHDQIVCHANPVRLHWVSLA 119
             +W    +E ++VV M L  +   G  R +D H  +E +V  QI+ HA+ VRLHWV+L+
Sbjct: 60  --IWTDGAQEFNVVVAMVLGHLLSIGFVRAIDFHFLLETIVEQQIMSHADSVRLHWVALS 117

Query: 120 IIVVAD 125
           ++V+++
Sbjct: 118 VVVISN 123