Jatropha Genome Database

JcCB0005461.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.30 - phase: 0 /partial
         (76 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SQS2_RICCO (tr|B9SQS2) Calcium ion binding protein, putative O...    62   3e-08

>B9SQS2_RICCO (tr|B9SQS2) Calcium ion binding protein, putative OS=Ricinus
           communis GN=RCOM_1217180 PE=4 SV=1
          Length = 183

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 1   FLSGSYMSCRQCFNNGSGDPYNICYDCYSRNNIDHHKDATFVDNIQLHCFAVKGSADNNG 60
           FL+G Y +C QCFN GSG+ Y++C  CY   NI+HHKDA F+DN  L     K   +   
Sbjct: 99  FLAGVYFTCVQCFN-GSGNTYDLCSSCYRDKNINHHKDALFLDNYTL--LQAKRQQNKAS 155

Query: 61  STTRSSGGKVCI 72
            + R SG    I
Sbjct: 156 GSQRKSGASEAI 167