Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HIF2_POPTR (tr|B9HIF2) Predicted protein OS=Populus trichocarp...   176   2e-42
B9HXJ0_POPTR (tr|B9HXJ0) Predicted protein OS=Populus trichocarp...   168   4e-40
B9RED1_RICCO (tr|B9RED1) RNA binding protein, putative OS=Ricinu...   167   9e-40
D7T9X3_VITVI (tr|D7T9X3) Whole genome shotgun sequence of line P...   120   1e-25
B9IK85_POPTR (tr|B9IK85) Predicted protein OS=Populus trichocarp...    86   4e-15
D7KWZ8_ARALY (tr|D7KWZ8) Putative uncharacterized protein OS=Ara...    80   3e-13
B9H447_POPTR (tr|B9H447) Predicted protein OS=Populus trichocarp...    78   1e-12
D7KQJ2_ARALY (tr|D7KQJ2) Putative uncharacterized protein OS=Ara...    75   6e-12
A5C6W0_VITVI (tr|A5C6W0) Putative uncharacterized protein OS=Vit...    75   1e-11

>B9HIF2_POPTR (tr|B9HIF2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_765836 PE=4 SV=1
          Length = 211

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 107/161 (66%), Gaps = 3/161 (1%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           L+INRYPRDLLQRFMS++ QQ +T +S         LNLGLSLGGRFGVDKS+KKLTRSS
Sbjct: 6   LDINRYPRDLLQRFMSSDAQQYQTATSDGEETEEIELNLGLSLGGRFGVDKSSKKLTRSS 65

Query: 85  SIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSEK 144
           SIAGSIPL R++DA  TPP SYP+LMRTSSLP            MQSLRR+EAKRRRSEK
Sbjct: 66  SIAGSIPLLRDYDALTTPPASYPLLMRTSSLPTETEEEWRKRKEMQSLRRMEAKRRRSEK 125

Query: 145 QKXXXXXXXXXXXXXXXXXWIPTWARQGSSGAMSVNRCNTL 185
           Q+                 W+PTWA + S     VNR N L
Sbjct: 126 QRNLRGELSLEEVKLNKGNWVPTWASKQSG---VVNRGNNL 163


>B9HXJ0_POPTR (tr|B9HXJ0) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_769927 PE=4 SV=1
          Length = 335

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 106/162 (65%), Gaps = 3/162 (1%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           LEINRYPRDL+QR +S++ QQ KT +S         LNLGLSLGGRFGVDK+++KLTRSS
Sbjct: 6   LEINRYPRDLVQRLISSDAQQYKTATSEGEEAEEIELNLGLSLGGRFGVDKTSEKLTRSS 65

Query: 85  SIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSEK 144
           SIAGSIPL R+HDA +TPP+SYP L+RTSSLP             QSLRR+EAKRRRSEK
Sbjct: 66  SIAGSIPLLRDHDALSTPPVSYPFLIRTSSLPTETEEEWRKRKENQSLRRMEAKRRRSEK 125

Query: 145 QKXXXXXXXXXXXXXXXXXWIPTWARQGSSGAMSVNRCNTLH 186
           QK                 W+PTWA + S     VNR + L 
Sbjct: 126 QKNLRGELNLEEVKLNKGNWVPTWANKQSG---VVNRSSNLE 164


>B9RED1_RICCO (tr|B9RED1) RNA binding protein, putative OS=Ricinus communis
           GN=RCOM_1620530 PE=4 SV=1
          Length = 355

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 115/207 (55%), Gaps = 16/207 (7%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           LEIN+YPRDLLQRFMS ++QQ KT            LNLGLSLGGRFGVDK++KKLTRSS
Sbjct: 23  LEINKYPRDLLQRFMSNDSQQLKTSEGEEDNTEEIELNLGLSLGGRFGVDKTSKKLTRSS 82

Query: 85  SIAGSIPLAREHDAFNT-PPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSE 143
           SIAGSIPL R+HDAFNT P +SYP+L+RTSSLP            MQ+LRR+EAKRRRSE
Sbjct: 83  SIAGSIPLVRDHDAFNTQPAVSYPLLIRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRSE 142

Query: 144 KQKXXX-------XXXXXXXXXXXXXXWI-PTWARQGSSGAMSVNRCNTLHXXXXXXXXX 195
           KQK                        W+ PTW+R       +VNR NTL          
Sbjct: 143 KQKNLNLNRGELSLEDERKGLNANRGNWVAPTWSR-------NVNRGNTLQGLIGQQQGS 195

Query: 196 XXXXXXXXXXXXXXXXXXXKPIQGSIS 222
                              KP+QG+ S
Sbjct: 196 QGSVESQGGSSSGISEMESKPVQGTSS 222


>D7T9X3_VITVI (tr|D7T9X3) Whole genome shotgun sequence of line PN40024,
           scaffold_11.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00012225001 PE=4 SV=1
          Length = 353

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 27  INRYPRDLLQRFMSTETQQQKTPS--SXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           + + PRDLLQR M    +Q +  S            LNLGLSLGGRFGVDKS KKL RSS
Sbjct: 1   MEKNPRDLLQRLMGNSGEQSQYASMVKGEDDPEEIELNLGLSLGGRFGVDKSEKKLMRSS 60

Query: 85  SIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSEK 144
           SIAGSI + R+ DA  TP +SY  LMRTSSLP            +Q+LRR+EAKRRRSEK
Sbjct: 61  SIAGSIGITRDEDALVTPAVSYSSLMRTSSLPTETQEEWRKRKELQTLRRMEAKRRRSEK 120

Query: 145 QK 146
           Q+
Sbjct: 121 QR 122


>B9IK85_POPTR (tr|B9IK85) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_577758 PE=4 SV=1
          Length = 224

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 28  NRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSSSIA 87
           N  P++LLQRF+S      +  +          L+LGLSL GRFGVD  AKK+TRSSSIA
Sbjct: 23  NNLPKELLQRFISGNHYNHRL-NGEEGEDDDVELSLGLSLNGRFGVDPKAKKITRSSSIA 81

Query: 88  GSI--PLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSEKQ 145
                P      AF    L    L RT SLP            MQ+LRR+EAKR+R+EKQ
Sbjct: 82  SDFINPTGENGSAFVVSNLESNYLPRTCSLPTETKEELRKRKEMQTLRRMEAKRKRTEKQ 141

Query: 146 K 146
           K
Sbjct: 142 K 142


>D7KWZ8_ARALY (tr|D7KWZ8) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_894706 PE=4 SV=1
          Length = 351

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 69/131 (52%), Gaps = 18/131 (13%)

Query: 30  YPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAK-KLTRSSSIAG 88
           +PRDLLQRF+S   + +              LNLGLSLGGRFGVDKS   KL RSSS+  
Sbjct: 19  FPRDLLQRFISNSVEGEDD--DEEEEDDEIELNLGLSLGGRFGVDKSNNNKLVRSSSVVV 76

Query: 89  SIPLAREHD------AFNTPPLSYPV---------LMRTSSLPXXXXXXXXXXXXMQSLR 133
           ++PL RE        A  T  +S            LMRT+SLP            MQ+LR
Sbjct: 77  TMPLFREDHHHHQAAAMITTKVSTETVAGATRGTGLMRTTSLPAESEEEWRKRKEMQTLR 136

Query: 134 RLEAKRRRSEK 144
           R+ AKRRRSEK
Sbjct: 137 RMAAKRRRSEK 147


>B9H447_POPTR (tr|B9H447) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_556310 PE=4 SV=1
          Length = 358

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 68/125 (54%), Gaps = 13/125 (10%)

Query: 28  NRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRS--SS 85
           N +P+DLL RF+S      K             L+LGLSL GRFGVD  AKK+TRS  SS
Sbjct: 23  NNFPKDLLPRFISGNHCNHK-----LNGEEDVELSLGLSLNGRFGVDPKAKKITRSRPSS 77

Query: 86  IAGSI--PLAREH---DAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRR 140
           IA     PL RE+    +F  P +    L RT SLP            MQ+LRR+EAKR+
Sbjct: 78  IATDFVNPL-RENGNGSSFVVPNMESNNLSRTCSLPTETEEEWRKRKEMQTLRRMEAKRK 136

Query: 141 RSEKQ 145
           RSEKQ
Sbjct: 137 RSEKQ 141


>D7KQJ2_ARALY (tr|D7KQJ2) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_471533 PE=4 SV=1
          Length = 328

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 62/112 (55%), Gaps = 6/112 (5%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXX--XXXXXXLNLGLSLGGRFGVDKSAKKLTR 82
           L+I++YPRDLL+ FMS     +                LNLGLSLGGRFGVDK+ +KL R
Sbjct: 23  LDIDKYPRDLLRGFMSENGGGRAFHGGELGCDDESAIELNLGLSLGGRFGVDKTPRKLKR 82

Query: 83  SSSIAGSIPLAREHDAFNTPPLSYPV-LMRTSSLPXXXXXXXXXXXXMQSLR 133
           SSS+  ++P    +D+    P +Y V L RT+SLP            MQSLR
Sbjct: 83  SSSVLDTVPF---NDSTVAEPENYTVGLERTTSLPAEMEEEWRKRKEMQSLR 131


>A5C6W0_VITVI (tr|A5C6W0) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_038107 PE=4 SV=1
          Length = 1100

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVD-KSAKKLTRS 83
           +++N  P DLLQR ++     +K   +         L+LGLSL GRFGVD K AK LTRS
Sbjct: 732 VQMNGLPGDLLQRVIAGNLFPRKFEEAASEETGEIELSLGLSLNGRFGVDPKKAKMLTRS 791

Query: 84  SSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSE 143
           SSI+  +   R  D  +T  L    L RT SLP            +Q+LRRLEAKR+R+ 
Sbjct: 792 SSISDFMTPLRYQDRAST-VLPITALTRTCSLPMETEEEWRKRKELQTLRRLEAKRKRTA 850

Query: 144 KQK 146
           KQ+
Sbjct: 851 KQR 853