Jatropha Genome Database

JcCB0000571.50
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.50 - phase: 0 /pseudo/partial
         (181 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SW11_RICCO (tr|B9SW11) Putative uncharacterized protein OS=Ric...   100   5e-20
B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarp...    71   4e-11
A5C5X2_VITVI (tr|A5C5X2) Putative uncharacterized protein OS=Vit...    65   3e-09
B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ric...    65   3e-09
B9SIL6_RICCO (tr|B9SIL6) Putative uncharacterized protein OS=Ric...    64   7e-09
B9SNB2_RICCO (tr|B9SNB2) Putative uncharacterized protein OS=Ric...    58   4e-07
D7UBP9_VITVI (tr|D7UBP9) Whole genome shotgun sequence of line P...    57   7e-07
B9GFB6_POPTR (tr|B9GFB6) F-box family protein OS=Populus trichoc...    56   2e-06

>B9SW11_RICCO (tr|B9SW11) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0662970 PE=4 SV=1
          Length = 186

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 6/139 (4%)

Query: 6   CPGFVNGAMHWI-TYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVIS-SCDFKVHVFG 63
            P +VN A HWI +Y+ +    R   I+VFD++DEVF EI+LP+SLV +   +  V  FG
Sbjct: 6   VPVYVNNAFHWIMSYRMEGVGVRSL-ILVFDVKDEVFREIILPESLVNAIETEVDVKRFG 64

Query: 64  ESSITVIHK---KDKKMSVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFLQ 120
           +SSI VI     ++   S + VMK YGV+ SWV    VGK  +GK  VLGF  NG + ++
Sbjct: 65  DSSIAVIFSSVPREFHNSQIWVMKEYGVIESWVEYAKVGKRRKGKSTVLGFRKNGQLLVK 124

Query: 121 FHRGGIASQNIESRRLKNL 139
           F RG IA  N E++ ++N+
Sbjct: 125 FFRGQIALINQENKCIQNI 143


>B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_568920 PE=4 SV=1
          Length = 381

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 7/137 (5%)

Query: 8   GFVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSL--VISSCDFKVHVFGES 65
            F+NG +HWI Y++  +      ++ FD+ DE+F EI LP  L  V  SC   + V+ ES
Sbjct: 208 AFLNGVVHWIAYRADQHEGVSNVVLGFDMSDEIFLEIALPSCLANVRPSC-LSLMVYKES 266

Query: 66  SITVIHKK--DKKMSVVCVMKNYGVVASWV-MLGTVGKDWRGKLRVLGFMSNGDVFLQFH 122
           SI+V            + VMK YGVV SW  ++ T+     G  R LG +   ++ ++  
Sbjct: 267 SISVCQASFLSSVQFHIWVMKEYGVVESWTKLVLTLAAQGEGVPRALG-IRKEELLMEKK 325

Query: 123 RGGIASQNIESRRLKNL 139
           RG I S ++ES+ +++L
Sbjct: 326 RGWIVSGDLESQLVRDL 342


>A5C5X2_VITVI (tr|A5C5X2) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_041941 PE=4 SV=1
          Length = 409

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)

Query: 8   GFVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSI 67
             VNG +HW+T   +       FI+ FDL DE F EI  P    +S C++ + V G    
Sbjct: 235 ALVNGRLHWVTRPRRYVTR---FIVSFDLADEQFREIPKPDCGGLSRCNYHLLVLGGCLS 291

Query: 68  TVIHKKDKKMSVVCVMKNYGVVASWVMLGTVG---------------KDWRGK-----LR 107
             +H+ + K+  V VMK Y V  SW+    +G               + WR       +R
Sbjct: 292 AAVHRSNGKLE-VWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVR 350

Query: 108 VLGFMSNGDVFLQFHRGGIASQNIESRRLKNL 139
           +L  + NG++ L++    + S N E  + K+L
Sbjct: 351 LLCLLKNGEILLEYKGRVLVSYNPERGKFKDL 382


>B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0129370 PE=4 SV=1
          Length = 176

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 27/124 (21%)

Query: 5   SCPGFVNGAMHW-ITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFG 63
           + P   N A+HW +  + KN        +VF    +  G + +         +  V  FG
Sbjct: 70  ATPALSNDALHWPVEVEGKN--------LVF----KCLGSVKV--------TELTVKAFG 109

Query: 64  ESSITVIHKKDKKM---SVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFLQ 120
           ESSI VI++ D      S + VMK +G   +W  L TVGK WRG  +VL F +NG+V +Q
Sbjct: 110 ESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVGKRWRGSSKVLEFRNNGEVLVQ 166

Query: 121 FHRG 124
           F+RG
Sbjct: 167 FYRG 170


>B9SIL6_RICCO (tr|B9SIL6) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0822970 PE=4 SV=1
          Length = 371

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 14/143 (9%)

Query: 8   GFVNGAMHWITYK-SKNNNEREFFIMVFDLRDEVFGEIMLPQSLV-ISSCDFKVHVFGES 65
            + NG  HW+     K  +  +  +  FDL DEVF E+M P  L  ++     + V+GES
Sbjct: 205 AYSNGVFHWLARAPGKEGSPDKLTLASFDLGDEVFREMMFPDDLAQVNENHLSLVVYGES 264

Query: 66  SITVIH---KKDK--------KMSVVCVMKNYGVVASWVMLGTVG-KDWRGKLRVLGFMS 113
              + H   K D         +   + V+K +G   SW    T G +D+ G +RVL F  
Sbjct: 265 LALLQHLSWKSDDFSWSLGYYESCCIWVLKKHGEGRSWSKQYTFGMQDYGGLVRVLSFRK 324

Query: 114 NGDVFLQFHRGGIASQNIESRRL 136
           NG+V LQ     +AS + E+ R+
Sbjct: 325 NGEVLLQIRSSELASYDPETNRV 347


>B9SNB2_RICCO (tr|B9SNB2) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0174360 PE=4 SV=1
          Length = 242

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 9   FVNGAMHWITYKSKNNNE--REFFIMVFDLRDEVFGEIMLPQSLV-ISSCDFKVHVFGES 65
           F+NGA+HWI Y  ++     R+  +++FD+  EVF E+ LP S+  +S  D  V   G+ 
Sbjct: 68  FLNGAVHWIGYNPRHEGSDFRDLSMVLFDMDKEVFDEMKLPDSVCGLSVLDLSVVASGKV 127

Query: 66  SITVIHKKDKKMSVV-------CVMKNYGVVASWVMLGTVGKDWRGKLR-VLGFMSNGDV 117
              V + +  +   +        VMK YG V SW    T+  D +G +R  LG  +NG +
Sbjct: 128 LSLVQYNRHTRSQWIQYGSCSFWVMKEYGKVESWSKQFTI--DLQGGVRKSLGLGNNGQM 185

Query: 118 FLQFHRGGIASQNIESRRLKNLIPAVKYTHLIFMEETQIKCFQLL 162
            L    G + S + +++   +L   ++     F  E  I+  +LL
Sbjct: 186 LLVASNGELVSYDSQNQETSHL--GIQGIANSFHLEAYIETLELL 228


>D7UBP9_VITVI (tr|D7UBP9) Whole genome shotgun sequence of line PN40024,
           scaffold_123.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00013506001 PE=4 SV=1
          Length = 423

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 22/143 (15%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQ---SLVISSC--DFKVHVFG 63
           F+NGA+HW+  K    +  +  I+ FD+  +VF EIMLP      +I  C  D+K     
Sbjct: 222 FINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKEIMLPDFGYDELIRKCLADYK----- 276

Query: 64  ESSITVIHKKDKKMSVVC---VMKNYGVVASWVMLGTVGKDWRGKLRVL---GFMSNGDV 117
             S++V+       +  C   VM+ YGV  SW    T+    R ++ ++    F  NG+ 
Sbjct: 277 -GSLSVLFYDAYHSNENCDVWVMEEYGVAKSWTKHFTI----RHEIEIIIPFEFFDNGEA 331

Query: 118 FLQFHR-GGIASQNIESRRLKNL 139
            LQ  + GG  S N +  R ++L
Sbjct: 332 ILQKKKSGGFISWNPDGIRFRDL 354


>B9GFB6_POPTR (tr|B9GFB6) F-box family protein OS=Populus trichocarpa
           GN=POPTRDRAFT_752292 PE=4 SV=1
          Length = 363

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 4   SSCPGFVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISS-CDFKVHVF 62
           S+C  F+NG  HWI Y S   +E     + F+L +EVF ++ +P  LV     D  + VF
Sbjct: 187 SAC-AFLNGVCHWIGYNSLERDEPRHATVAFNLGNEVFVQMTVPDCLVWDDFIDISLTVF 245

Query: 63  GESSITVIHKK---DKKMSVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFL 119
                 V  KK   ++    V VMK YGV  SW  L  + +   G  R++ F  N +V L
Sbjct: 246 DGMLSLVPCKKWLWEETSCSVWVMKEYGVGESWTKLFNI-EHVEGIQRLVAFRENNEVLL 304

Query: 120 QFHRGGIASQN 130
               G + S +
Sbjct: 305 AGEDGELISYD 315