Jatropha Genome Database

JcCB0000571.40
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.40 - phase: 0 
         (116 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SW11_RICCO (tr|B9SW11) Putative uncharacterized protein OS=Ric...    82   2e-14
B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ric...    71   3e-11
B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarp...    55   3e-06

>B9SW11_RICCO (tr|B9SW11) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0662970 PE=4 SV=1
          Length = 186

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 9/101 (8%)

Query: 1   MLPECLVNS--SALDVASFGESSIAVI-----RQLYDKKSDIWVMKKYGEVASWLMLGTM 53
           +LPE LVN+  + +DV  FG+SSIAVI     R+ ++  S IWVMK+YG + SW+    +
Sbjct: 45  ILPESLVNAIETEVDVKRFGDSSIAVIFSSVPREFHN--SQIWVMKEYGVIESWVEYAKV 102

Query: 54  GKCWRGKSRVLGFRSEGDVFLHFHRGGIASRNVESQRVENL 94
           GK  +GKS VLGFR  G + + F RG IA  N E++ ++N+
Sbjct: 103 GKRRKGKSTVLGFRKNGQLLVKFFRGQIALINQENKCIQNI 143


>B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0129370 PE=4 SV=1
          Length = 176

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 8/81 (9%)

Query: 4   ECL--VNSSALDVASFGESSIAVIRQL---YDKKSDIWVMKKYGEVASWLMLGTMGKCWR 58
           +CL  V  + L V +FGESSI VI Q    +  +SDIWVMK++G   +W  L T+GK WR
Sbjct: 93  KCLGSVKVTELTVKAFGESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVGKRWR 149

Query: 59  GKSRVLGFRSEGDVFLHFHRG 79
           G S+VL FR+ G+V + F+RG
Sbjct: 150 GSSKVLEFRNNGEVLVQFYRG 170


>B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_568920 PE=4 SV=1
          Length = 381

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 2   LPECLVN--SSALDVASFGESSIAVIRQ--LYDKKSDIWVMKKYGEVASWLMLG-TMGKC 56
           LP CL N   S L +  + ESSI+V +   L   +  IWVMK+YG V SW  L  T+   
Sbjct: 246 LPSCLANVRPSCLSLMVYKESSISVCQASFLSSVQFHIWVMKEYGVVESWTKLVLTLAAQ 305

Query: 57  WRGKSRVLGFRSEGDVFLHFHRGGIASRNVESQRVENL 94
             G  R LG R E ++ +   RG I S ++ESQ V +L
Sbjct: 306 GEGVPRALGIRKE-ELLMEKKRGWIVSGDLESQLVRDL 342