Jatropha Genome Database

JcCB0000571.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.30 - phase: 2 /pseudo/partial
         (178 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ric...    77   6e-13
B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarp...    62   3e-08

>B9T366_RICCO (tr|B9T366) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0129370 PE=4 SV=1
          Length = 176

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 6/103 (5%)

Query: 50  LRHLNSNSWKDITHIYPKYGIDQHFVPAFVNIALHWAVTDWKRDERRKALVKAYSSDLTV 109
           L  LNSNSWK I+++  K  ++++  PA  N ALHW V    ++   K L     ++LTV
Sbjct: 46  LYSLNSNSWKKISNLPRKCSVNEYATPALSNDALHWPVEVEGKNLVFKCLGSVKVTELTV 105

Query: 110 KVFGKLSIVVIHRSD---SYESHIWLMKEYGVVASWVKLVTLA 149
           K FG+ SIVVI+++D    YES IW+MKE+G   +W KL T+ 
Sbjct: 106 KAFGESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVG 145


>B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_568920 PE=4 SV=1
          Length = 381

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 59/130 (45%), Gaps = 24/130 (18%)

Query: 48  IGLRHLNSNSWKDITHIYP-KYGIDQHFVPAFVNIALHWAVTDWKRDERRKALVKAYS-- 104
           I L  LN  SW+ I    P +Y  DQ    AF+N  +HW      + E    +V  +   
Sbjct: 178 IALYSLNEGSWRGIRQTGPLRYDTDQRVSSAFLNGVVHWIAYRADQHEGVSNVVLGFDMS 237

Query: 105 ------------------SDLTVKVFGKLSIVVIHRS--DSYESHIWLMKEYGVVASWVK 144
                             S L++ V+ + SI V   S   S + HIW+MKEYGVV SW K
Sbjct: 238 DEIFLEIALPSCLANVRPSCLSLMVYKESSISVCQASFLSSVQFHIWVMKEYGVVESWTK 297

Query: 145 LV-TLANDGE 153
           LV TLA  GE
Sbjct: 298 LVLTLAAQGE 307