Jatropha Genome Database

JcCA0317631.40
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317631.40 - phase: 0 /pseudo/partial
         (341 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0P490_MAIZE (tr|C0P490) Putative uncharacterized protein OS=Zea...    97   3e-18
D7TMT9_VITVI (tr|D7TMT9) Whole genome shotgun sequence of line P...    65   1e-08

>C0P490_MAIZE (tr|C0P490) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 183

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 61  TQALDMLPYSDNICLVDASFSGLRPNLASTWSRIAGPPGCAIQNREFQ-SDMPKGLKAST 119
           T   DM PYS +   + +S  G   + AST S+ A PPG   Q R FQ   MP    AST
Sbjct: 2   TDGPDMFPYSLSTRRLASSLCGSNLSPASTLSKTARPPGWTAQKRSFQLPPMPSSESAST 61

Query: 120 KLFSIFFEISPGTSLRRXNVSPTSRRCPSIAPSLSGRIVWAAEXXXXXXXXXXXXXXEPT 179
              S+F     G SL     +P+S+  P+    LSG +V  A+               PT
Sbjct: 62  IHCSMFSRTRDGISLEGWKCNPSSQSWPAATCLLSGIMVCEADSISKSGSSTETGSA-PT 120

Query: 180 MTAAAPSPNKAWPTRLSRWVSLGPRNVTAVISEQTTRTRAPLLFSARSLARRSTVPPAKQ 239
           MTA APSPN      +S W S G R   +V S Q T TRAP LFSA SLARRS   P +Q
Sbjct: 121 MTAPAPSPNSDCKMSVSTWASWGARKRVSVTSAQATSTRAPRLFSAMSLARRSAAQPLEQ 180

Query: 240 P 240
           P
Sbjct: 181 P 181


>D7TMT9_VITVI (tr|D7TMT9) Whole genome shotgun sequence of line PN40024,
          scaffold_100.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00010591001 PE=4 SV=1
          Length = 84

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 37/50 (74%)

Query: 50 DFFLTSSKMNKTQALDMLPYSDNICLVDASFSGLRPNLASTWSRIAGPPG 99
          DF L SSK+N T ALDMLPYS N CLV +SF   + + AST SRIAGPPG
Sbjct: 35 DFLLISSKINNTHALDMLPYSLNTCLVASSFFLSKLSFASTASRIAGPPG 84