Jatropha Genome Database

JcCA0316511.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316511.20 - phase: 2 /partial
         (66 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SX83_RICCO (tr|B9SX83) Pentatricopeptide repeat-containing pro...    67   8e-10
D7LSX0_ARALY (tr|D7LSX0) Pentatricopeptide repeat-containing pro...    58   4e-07
B9IBN2_POPTR (tr|B9IBN2) Predicted protein OS=Populus trichocarp...    56   1e-06

>B9SX83_RICCO (tr|B9SX83) Pentatricopeptide repeat-containing protein, putative
           OS=Ricinus communis GN=RCOM_0859420 PE=4 SV=1
          Length = 567

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 4/42 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFHC 65
           + LF+EMRE GI+MDG+TLSGVI    TACCND+NLIRQ HC
Sbjct: 125 LYLFREMRETGIDMDGYTLSGVI----TACCNDVNLIRQLHC 162


>D7LSX0_ARALY (tr|D7LSX0) Pentatricopeptide repeat-containing protein
           OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906282
           PE=4 SV=1
          Length = 721

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 4/43 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFHCW 66
           M LFK MRE+G E+DGFTLS    G+I ACC+ ++LI+Q HC+
Sbjct: 125 MVLFKRMRELGFEVDGFTLS----GLIAACCDRVDLIKQLHCF 163


>B9IBN2_POPTR (tr|B9IBN2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_774131 PE=4 SV=1
          Length = 720

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 4/41 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFH 64
           + LF EMRE+G+ MDGFT S    GVITACCN + LIRQ H
Sbjct: 125 LSLFGEMREMGLVMDGFTFS----GVITACCNHVGLIRQLH 161