Jatropha Genome Database

JcCA0315891.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315891.10 - phase: 0 /partial
         (145 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9I949_POPTR (tr|B9I949) Predicted protein OS=Populus trichocarp...   151   2e-35
D7M4W3_ARALY (tr|D7M4W3) Pentatricopeptide repeat-containing pro...   119   1e-25
D7U833_VITVI (tr|D7U833) Whole genome shotgun sequence of line P...   103   4e-21
A5BJJ6_VITVI (tr|A5BJJ6) Putative uncharacterized protein (Fragm...   103   5e-21
Q2HTC1_MEDTR (tr|Q2HTC1) Tetratricopeptide-like helical OS=Medic...    97   4e-19
D5AAH0_PICSI (tr|D5AAH0) Putative uncharacterized protein OS=Pic...    82   2e-14

>B9I949_POPTR (tr|B9I949) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_572467 PE=4 SV=1
          Length = 475

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 101/149 (67%), Gaps = 12/149 (8%)

Query: 1   MHQRFLRFSK----TAITVTRSVIFPPKLQPLFFHSSSAHLHRXXXXXXXXXXXXXXXXX 56
           MH+ FL   K    T    TR+V   PK Q LFF+SSS H H+                 
Sbjct: 1   MHKPFLVTCKILLLTTPPRTRTVPILPKPQSLFFYSSSPHHHQQHKRELEPSDS------ 54

Query: 57  XXNPNIISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGR 116
             +PN  +KS IGSP+RVQKLIASQSD LLAKEIFDYASRQPNF+HSYSSYL+LILKLGR
Sbjct: 55  --HPNANTKSPIGSPSRVQKLIASQSDPLLAKEIFDYASRQPNFQHSYSSYLILILKLGR 112

Query: 117 SKYFSLIDEILIDLKSKHYVVKSNVFSYI 145
           +KYFS ID++L DLKSK+Y V   +FSYI
Sbjct: 113 AKYFSFIDDLLTDLKSKNYPVTPTLFSYI 141


>D7M4W3_ARALY (tr|D7M4W3) Pentatricopeptide repeat-containing protein
           OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490436
           PE=4 SV=1
          Length = 1162

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/87 (66%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 59  NPNIISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSK 118
           NP+   KS IGSP RVQKLIASQSD LLAKEIFDYAS+QPNFRHS SSYL+LILKLGR++
Sbjct: 43  NPS--PKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSQSSYLILILKLGRAR 100

Query: 119 YFSLIDEILIDLKSKHYVVKSNVFSYI 145
           YF+LID++L   +S  Y +   +F+Y+
Sbjct: 101 YFNLIDDVLAKHRSSGYPLTGEIFTYL 127


>D7U833_VITVI (tr|D7U833) Whole genome shotgun sequence of line PN40024,
           scaffold_48.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00027442001 PE=4 SV=1
          Length = 429

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 63  ISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSL 122
           +  S IGSP+RVQKLIASQSD LLAKEIFD AS QPNF+HSYSS+ +LILKLG ++ FSL
Sbjct: 51  VKPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSL 110

Query: 123 IDEILIDLKSKHYVVKSNVFSYI 145
           + ++L+ LKS+ Y +  ++FS I
Sbjct: 111 MQDLLMRLKSEQYSINPSLFSDI 133


>A5BJJ6_VITVI (tr|A5BJJ6) Putative uncharacterized protein (Fragment) OS=Vitis
           vinifera GN=VITISV_027905 PE=4 SV=1
          Length = 422

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 63  ISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSL 122
           +  S IGSP+RVQKLIASQSD LLAKEIFD AS QPNF+HSYSS+ +LILKLG ++ FSL
Sbjct: 6   VKPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSL 65

Query: 123 IDEILIDLKSKHYVVKSNVFSYI 145
           + ++L+ LKS+ Y +  ++FS I
Sbjct: 66  MQDLLMRLKSEQYSINPSLFSDI 88


>Q2HTC1_MEDTR (tr|Q2HTC1) Tetratricopeptide-like helical OS=Medicago truncatula
           GN=MtrDRAFT_AC150443g18v2 PE=4 SV=1
          Length = 451

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 68  IGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFS 121
           IGSP RVQKLIASQSD LLAKEIFDYAS QPNFRH+YS+YL+LILK GRSK+FS
Sbjct: 39  IGSPTRVQKLIASQSDPLLAKEIFDYASLQPNFRHNYSTYLILILKFGRSKHFS 92


>D5AAH0_PICSI (tr|D5AAH0) Putative uncharacterized protein OS=Picea sitchensis
           PE=2 SV=1
          Length = 486

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 54/71 (76%)

Query: 61  NIISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYF 120
           NI + S + +PARV KLIASQ+DALLA EIF+ ASRQP F+HSYS+Y  LI KLGR++ F
Sbjct: 90  NIRNHSRMLTPARVHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQF 149

Query: 121 SLIDEILIDLK 131
             ++ ++  ++
Sbjct: 150 KTMEGLIQQMR 160