Jatropha Genome Database

JcCA0311501.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.30 - phase: 1 /partial
         (128 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S4P8_RICCO (tr|B9S4P8) Cyclophilin, putative OS=Ricinus commun...    54   4e-06

>B9S4P8_RICCO (tr|B9S4P8) Cyclophilin, putative OS=Ricinus communis
           GN=RCOM_0990970 PE=4 SV=1
          Length = 688

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 44  KRPSISEGLKSRLGPRIDDQRSLNKXXXXXXXXXXXXXXXXXXXXDAVPPNHHXXXXXXX 103
           +RP+ISEGLKSRLGPR+DD+R +++                    DAVPP          
Sbjct: 610 RRPAISEGLKSRLGPRMDDRRPMDR-----GRLRSSSRSRSSGSPDAVPPKRRSRSASRS 664

Query: 104 XXXXXXGQQRGLVSYGDISPDLGTR 128
                 G  RGLVSYGD SPD G +
Sbjct: 665 RSSSPSG-HRGLVSYGDASPDFGQK 688