Jatropha Genome Database

JcCA0308941.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308941.10 + phase: 0 /TE/partial
         (662 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SXG0_RICCO (tr|B9SXG0) DNA helicase hus2, putative OS=Ricinus ...   174   4e-41
B9GZD8_POPTR (tr|B9GZD8) Predicted protein OS=Populus trichocarp...   118   3e-24
D7TGY4_VITVI (tr|D7TGY4) Whole genome shotgun sequence of line P...    62   3e-07

>B9SXG0_RICCO (tr|B9SXG0) DNA helicase hus2, putative OS=Ricinus communis
           GN=RCOM_0321820 PE=4 SV=1
          Length = 1233

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 114/158 (72%), Gaps = 11/158 (6%)

Query: 480 FSYRKSFHVENFWQAWHTLSSLQISCRSYLQPGKTGPTKDA--------RNDLKSSSNNC 531
           F   +S  VE   +AWH LS LQISCR+YLQPGKTGP K+A        R    SSS+  
Sbjct: 76  FQRLQSPQVE---KAWHALSCLQISCRNYLQPGKTGPLKNANLLQDVGQRPTFCSSSDGG 132

Query: 532 KYSERTLVHQNFSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLS 591
           KYSE   VHQNFSES  KNN+S RYMGN  PQDNA AAE  N + +Q++IKAS ANNT S
Sbjct: 133 KYSECLHVHQNFSESGAKNNKSERYMGNYVPQDNATAAETGNGLQRQSQIKASAANNTES 192

Query: 592 RDFAGSFNNHNIHTNQNRESAEASADFIDDDDLLGVIN 629
           + F+GSF++H+++T+ N+ESAEAS DFIDDDDLLG I+
Sbjct: 193 KTFSGSFSDHSVYTSHNKESAEASTDFIDDDDLLGNID 230


>B9GZD8_POPTR (tr|B9GZD8) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_553405 PE=4 SV=1
          Length = 1194

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 14/148 (9%)

Query: 493 QAWHTLSSLQISCRSYLQPGKTGPTKDARNDL----------KSSSNNCKYSERTLVHQN 542
           +AWH LS+LQIS R+Y++PG+TGP K+   DL          +SSSN  KYSE     +N
Sbjct: 83  KAWHALSTLQISSRNYIRPGQTGPVKNVSEDLSGNVGQRPTFQSSSNISKYSEGVYAQKN 142

Query: 543 FSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKAS-GANNTLSRDFAGSFNNH 601
            S    KN+E+ ++ GN  P DNA   ++ N+ G  ++IKAS G N   S   AGSF NH
Sbjct: 143 LSG---KNSEAAKHTGNVIPADNASHVQSGNNQGWPSDIKASSGVNTNQSNVLAGSFVNH 199

Query: 602 NIHTNQNRESAEASADFIDDDDLLGVIN 629
            + T Q +E  E SAD+IDDDDL+  I+
Sbjct: 200 TVQTCQTKEFVETSADYIDDDDLIESID 227


>D7TGY4_VITVI (tr|D7TGY4) Whole genome shotgun sequence of line PN40024,
           scaffold_35.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00023325001 PE=4 SV=1
          Length = 1235

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 15/138 (10%)

Query: 484 KSFHVENFWQAWHTLSSLQISCRSYLQPGKTGP---------TKDARN-DLKSSSN-NCK 532
           +S  VE   +AW  LSSL++S R+Y +PGK  P          +D R  +L+SS N N +
Sbjct: 52  QSLQVE---KAWGALSSLKLSSRNYSKPGKMAPLLKDASVEFPRDVRKCNLQSSHNTNNQ 108

Query: 533 YSERTLVHQNFSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLSR 592
           Y E  L HQN  E+    +E+    GNSF   +A  AE     G Q E K S   N+  +
Sbjct: 109 YLEHNLPHQNLGETNSSYSETASCRGNSFRSGSA-CAENAGREGGQNETKPSMLYNSHIQ 167

Query: 593 DFAGSFNNHNIHTNQNRE 610
               S    N+HT Q +E
Sbjct: 168 VVGQSSGTCNVHTGQVKE 185