Jatropha Genome Database

JcCA0308681.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0308681.10 - phase: 0 /pseudo/partial
         (78 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9TEL3_RICCO (tr|B9TEL3) Putative uncharacterized protein (Fragm...    71   4e-11

>B9TEL3_RICCO (tr|B9TEL3) Putative uncharacterized protein (Fragment)
          OS=Ricinus communis GN=RCOM_2008910 PE=4 SV=1
          Length = 78

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 40/55 (72%)

Query: 1  IPSTSDFP*AG*GASGKTRSIF*RTDSGHLETCFLRISPLVLNPCRHRNLGFLTV 55
          +PSTSDFP AG GAS KTRS F  T  GHL T F RI+ LVLNPCRHR LGF  +
Sbjct: 1  MPSTSDFPLAGKGASRKTRSNFSSTSPGHLSTNFFRIAALVLNPCRHRILGFFRI 55